Variant report

Variant	rs4693974
Chromosome Location	chr4:89810395-89810396
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10008568	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1246629	0.81[ASN][1000 genomes]
rs1246631	0.81[ASN][1000 genomes]
rs1246632	0.81[ASN][1000 genomes]
rs1246634	0.80[ASN][1000 genomes]
rs13149750	1.00[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1458551	0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs1458562	0.95[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1812329	0.85[ASN][1000 genomes]
rs2013701	0.85[CHB][hapmap];0.83[ASN][1000 genomes]
rs2045517	0.84[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs2446303	0.81[ASN][1000 genomes]
rs2446304	0.81[ASN][1000 genomes]
rs2464528	0.80[CHB][hapmap];0.81[ASN][1000 genomes]
rs2609255	0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs2609264	0.80[CHB][hapmap];0.81[ASN][1000 genomes]
rs2609265	0.80[CHB][hapmap];0.81[ASN][1000 genomes]
rs2704570	0.84[ASN][1000 genomes]
rs2704581	0.81[ASN][1000 genomes]
rs2704582	0.81[ASN][1000 genomes]
rs2704583	0.81[ASN][1000 genomes]
rs2869952	0.85[ASN][1000 genomes]
rs2869966	0.84[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs2869967	0.84[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs2904259	0.84[CHB][hapmap];0.83[ASN][1000 genomes]
rs4416442	0.84[ASN][1000 genomes]
rs4505789	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4693978	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6813090	0.81[ASN][1000 genomes]
rs6815970	0.84[ASN][1000 genomes]
rs6824218	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6830970	0.83[JPT][hapmap]
rs6837671	0.85[ASN][1000 genomes]
rs7671167	0.84[CHB][hapmap];0.83[ASN][1000 genomes]
rs7674369	0.85[ASN][1000 genomes]
rs7682317	0.85[ASN][1000 genomes]
rs7690839	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470051	chr4:89644931-90643144	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009354	chr4:89725914-89985155	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv998651	chr4:89800245-89933445	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv537175	chr4:89800245-89933445	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:89801800-89810600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:89802200-89820600	Weak transcription	Aorta	Aorta
3	chr4:89802600-89812800	Weak transcription	K562	blood
4	chr4:89802600-89825600	Weak transcription	Ovary	ovary
5	chr4:89805400-89817600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:89809200-89828800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:89809400-89813400	Enhancers	Fetal Intestine Small	intestine
8	chr4:89810000-89811400	Enhancers	Placenta	Placenta
9	chr4:89810200-89810600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr4:89810200-89811400	Enhancers	Psoas Muscle	Psoas
11	chr4:89810200-89811400	Enhancers	HepG2	liver

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