Variant report

Variant	rs4696068
Chromosome Location	chr4:174323048-174323049
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr4:174323011-174323192	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr4:174250302..174253123-chr4:174321821..174325585,3	K562	blood:
2	chr4:174322638..174325456-chr4:174363215..174365031,2	K562	blood:
3	chr4:174318732..174320254-chr4:174321335..174323187,2	K562	blood:
4	chr4:174253388..174255734-chr4:174320539..174323708,3	K562	blood:

Variant related genes	Relation type
SCRG1	TF binding region
ENSG00000164104	Chromatin interaction
ENSG00000248774	Chromatin interaction

rs_ID	r²[population]
rs13120486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4696067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6553693	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7680254	0.98[AFR][1000 genomes]

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174293400-174333200	Weak transcription	Gastric	stomach
2	chr4:174294000-174323800	Weak transcription	HSMMtube	muscle
3	chr4:174294000-174340400	Weak transcription	Fetal Intestine Large	intestine
4	chr4:174294200-174334400	Weak transcription	Right Ventricle	heart
5	chr4:174294200-174341600	Weak transcription	Fetal Intestine Small	intestine
6	chr4:174294400-174324600	Weak transcription	Thymus	Thymus
7	chr4:174294600-174338000	Weak transcription	Fetal Brain Male	brain
8	chr4:174294800-174334200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr4:174294800-174336200	Weak transcription	Adipose Nuclei	Adipose
10	chr4:174294800-174341800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr4:174295400-174331400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:174295400-174332200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr4:174295400-174335800	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr4:174297200-174333400	Weak transcription	Fetal Muscle Leg	muscle
15	chr4:174297200-174338000	Weak transcription	Esophagus	oesophagus
16	chr4:174297400-174338000	Weak transcription	Fetal Lung	lung
17	chr4:174300200-174339000	Weak transcription	Ovary	ovary
18	chr4:174300400-174333000	Weak transcription	Fetal Stomach	stomach
19	chr4:174303000-174333200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr4:174306200-174326400	Weak transcription	Dnd41	blood
21	chr4:174313200-174325800	Weak transcription	Left Ventricle	heart
22	chr4:174315800-174328400	Weak transcription	Primary T cells from cord blood	blood
23	chr4:174317200-174325000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr4:174318000-174323800	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr4:174318000-174331400	Weak transcription	Lung	lung
26	chr4:174318800-174323800	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr4:174319600-174335400	Weak transcription	Fetal Brain Female	brain
28	chr4:174319600-174341800	Weak transcription	NHDF-Ad	bronchial
29	chr4:174319800-174324000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr4:174320600-174327800	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr4:174320600-174331400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr4:174320600-174332000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr4:174320600-174335600	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr4:174320800-174324000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr4:174320800-174325000	Weak transcription	Stomach Smooth Muscle	stomach
36	chr4:174320800-174326800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr4:174320800-174330200	Weak transcription	Osteobl	bone
38	chr4:174320800-174330600	Weak transcription	Brain Angular Gyrus	brain
39	chr4:174320800-174335600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr4:174320800-174347000	Weak transcription	Aorta	Aorta
41	chr4:174321000-174325000	Weak transcription	Brain Substantia Nigra	brain
42	chr4:174321000-174326400	Weak transcription	Brain Anterior Caudate	brain
43	chr4:174321000-174330800	Weak transcription	Brain Hippocampus Middle	brain
44	chr4:174321000-174331200	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr4:174321000-174341800	Weak transcription	Colon Smooth Muscle	Colon
46	chr4:174321000-174341800	Weak transcription	Rectal Smooth Muscle	rectum
47	chr4:174321200-174330400	Weak transcription	Brain Cingulate Gyrus	brain
48	chr4:174321200-174330400	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr4:174321800-174323400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr4:174322000-174323200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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