Variant report

Variant	rs4698120
Chromosome Location	chr4:15743332-15743333
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10023845	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs11724635	0.81[CHB][hapmap]
rs11933202	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs12651314	0.85[ASN][1000 genomes]
rs2286879	0.91[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs3893376	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs4263397	0.86[CHB][hapmap]
rs4266290	0.81[CHB][hapmap]
rs4613561	0.80[CHB][hapmap]
rs4698412	0.81[CHB][hapmap]
rs4698413	0.81[CHB][hapmap]
rs6852450	1.00[CEU][hapmap];0.90[CHB][hapmap];0.89[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs868763	0.84[ASN][1000 genomes]
rs884474	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv428439	chr4:15556961-15749520	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4698120	FGFBP2	cis	parietal	SCAN
rs4698120	RPL26L1	trans	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15723000-15744600	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr4:15741400-15743600	Enhancers	Liver	Liver
3	chr4:15742200-15748000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:15742800-15744600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
5	chr4:15742800-15745000	ZNF genes & repeats	Primary B cells from cord blood	blood
6	chr4:15743000-15744000	Enhancers	Dnd41	blood
7	chr4:15743000-15744000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
8	chr4:15743200-15745000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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