Variant report

Variant	rs2286879
Chromosome Location	chr4:15740880-15740881
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10023845	0.89[JPT][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10222984	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10516292	0.84[AMR][1000 genomes]
rs11724635	0.81[CHB][hapmap]
rs11933202	0.81[CEU][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12651314	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs3893376	0.80[CEU][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4263397	0.85[CHB][hapmap]
rs4266290	0.80[CHB][hapmap]
rs4613561	0.80[CHB][hapmap]
rs4698120	0.91[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs4698412	0.81[CHB][hapmap]
rs4698413	0.81[CHB][hapmap]
rs6852450	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs868763	0.82[EUR][1000 genomes]
rs884474	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv428439	chr4:15556961-15749520	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15707400-15742800	Weak transcription	Primary B cells from cord blood	blood
2	chr4:15723000-15743000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr4:15723000-15744600	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr4:15729000-15743200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr4:15733600-15742800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr4:15735400-15742800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr4:15738400-15742600	Enhancers	Dnd41	blood
8	chr4:15739800-15741000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr4:15739800-15741400	Weak transcription	Fetal Intestine Small	intestine
10	chr4:15740200-15741000	Enhancers	NH-A	brain
11	chr4:15740200-15741200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:15740200-15741600	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr4:15740400-15741000	Enhancers	Liver	Liver
14	chr4:15740800-15742200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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