Variant report

Variant	rs10516292
Chromosome Location	chr4:15749703-15749704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10023845	1.00[CHB][hapmap];0.81[CHD][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10222984	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11933202	1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12651314	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2286879	0.84[AMR][1000 genomes]
rs3893376	1.00[CHB][hapmap];0.86[CHD][hapmap];0.89[MEX][hapmap];0.87[ASN][1000 genomes]
rs4698120	0.83[CHB][hapmap]
rs6834477	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs868763	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs884474	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10516292	CD38	cis	parietal	SCAN
rs10516292	FAM184B	cis	parietal	SCAN
rs10516292	CCL11	trans	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15744000-15753800	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr4:15744600-15750800	Weak transcription	Fetal Thymus	thymus
3	chr4:15745800-15750600	Enhancers	Dnd41	blood
4	chr4:15745800-15755000	Weak transcription	Thymus	Thymus
5	chr4:15746400-15753800	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr4:15747600-15755600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr4:15748400-15755800	Weak transcription	Primary B cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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