Variant report

Variant	rs6834477
Chromosome Location	chr4:15758235-15758236
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:15642778..15644328-chr4:15756806..15758696,2	MCF-7	breast:
2	chr4:15756091..15759053-chr4:15760303..15762164,2	K562	blood:
3	chr4:15731303..15731853-chr4:15757889..15758739,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10023845	1.00[CHB][hapmap]
rs10516292	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11933202	1.00[CHB][hapmap]
rs3893376	1.00[CHB][hapmap]
rs4698120	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv10460	chr4:15757611-15818206	ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15752600-15767600	Weak transcription	Fetal Intestine Small	intestine
2	chr4:15755000-15758400	Enhancers	HUVEC	blood vessel
3	chr4:15755600-15759000	Flanking Active TSS	Primary T cells from cord blood	blood
4	chr4:15755600-15760400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:15755800-15759200	Flanking Active TSS	Dnd41	blood
6	chr4:15757000-15758600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
7	chr4:15757200-15758400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr4:15757200-15758800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr4:15757200-15759000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
10	chr4:15757200-15759000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr4:15757200-15759000	Enhancers	NH-A	brain
12	chr4:15757200-15759200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr4:15757400-15758600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr4:15757400-15758800	Active TSS	Thymus	Thymus
15	chr4:15757400-15758800	Enhancers	HMEC	breast
16	chr4:15757400-15759200	Flanking Active TSS	GM12878-XiMat	blood
17	chr4:15757600-15758600	Flanking Active TSS	Primary B cells from cord blood	blood
18	chr4:15757600-15758800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
19	chr4:15757600-15759000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
20	chr4:15757600-15759200	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr4:15757600-15759200	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr4:15757800-15758400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr4:15757800-15758600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
24	chr4:15757800-15758600	Active TSS	Rectal Mucosa Donor 29	rectum
25	chr4:15757800-15758600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr4:15757800-15758800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
27	chr4:15757800-15759000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
28	chr4:15757800-15759000	Enhancers	Spleen	Spleen
29	chr4:15757800-15759000	Enhancers	NHEK	skin
30	chr4:15757800-15759200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr4:15758000-15758400	Flanking Active TSS	Primary B cells from peripheral blood	blood
32	chr4:15758000-15758400	Active TSS	Primary T helper naive cells from peripheral blood	blood
33	chr4:15758000-15758400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
34	chr4:15758000-15758400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr4:15758000-15758400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr4:15758000-15758400	Active TSS	Primary T killer memory cells from peripheral blood	blood
37	chr4:15758000-15758400	Active TSS	Duodenum Mucosa	Duodenum
38	chr4:15758000-15759000	Bivalent Enhancer	Osteobl	bone
39	chr4:15758000-15759400	Enhancers	Primary hematopoietic stem cells	blood
40	chr4:15758200-15758600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
41	chr4:15758200-15758600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
42	chr4:15758200-15758600	Enhancers	Psoas Muscle	Psoas
43	chr4:15758200-15758800	Flanking Active TSS	Fetal Thymus	thymus
44	chr4:15758200-15759000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood

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