Variant report

Variant	rs4698416
Chromosome Location	chr4:15758954-15758955
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15756091..15759053-chr4:15760303..15762164,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10003282	0.82[ASN][1000 genomes]
rs10005419	0.91[ASN][1000 genomes]
rs11930435	0.82[ASN][1000 genomes]
rs13105588	0.82[ASN][1000 genomes]
rs13117281	0.91[ASN][1000 genomes]
rs28409825	0.82[ASN][1000 genomes]
rs28703311	0.82[ASN][1000 genomes]
rs4343722	0.91[ASN][1000 genomes]
rs4377587	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs66998564	0.82[ASN][1000 genomes]
rs7659350	0.82[ASN][1000 genomes]
rs7674301	0.91[ASN][1000 genomes]
rs7681718	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv10460	chr4:15757611-15818206	ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15752600-15767600	Weak transcription	Fetal Intestine Small	intestine
2	chr4:15755600-15759000	Flanking Active TSS	Primary T cells from cord blood	blood
3	chr4:15755600-15760400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:15755800-15759200	Flanking Active TSS	Dnd41	blood
5	chr4:15757200-15759000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
6	chr4:15757200-15759000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr4:15757200-15759000	Enhancers	NH-A	brain
8	chr4:15757200-15759200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr4:15757400-15759200	Flanking Active TSS	GM12878-XiMat	blood
10	chr4:15757600-15759000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
11	chr4:15757600-15759200	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr4:15757600-15759200	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr4:15757800-15759000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
14	chr4:15757800-15759000	Enhancers	Spleen	Spleen
15	chr4:15757800-15759000	Enhancers	NHEK	skin
16	chr4:15757800-15759200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr4:15758000-15759000	Bivalent Enhancer	Osteobl	bone
18	chr4:15758000-15759400	Enhancers	Primary hematopoietic stem cells	blood
19	chr4:15758200-15759000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
20	chr4:15758400-15759000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
21	chr4:15758400-15759000	Enhancers	Duodenum Mucosa	Duodenum
22	chr4:15758400-15759200	Enhancers	Primary B cells from peripheral blood	blood
23	chr4:15758600-15759000	Enhancers	Rectal Mucosa Donor 29	rectum
24	chr4:15758600-15759200	Enhancers	Primary B cells from cord blood	blood
25	chr4:15758600-15759200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr4:15758600-15759200	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr4:15758600-15759600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr4:15758600-15759800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr4:15758600-15760000	Enhancers	Primary T cells fromperipheralblood	blood
30	chr4:15758600-15760200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr4:15758800-15759000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
32	chr4:15758800-15759000	Flanking Active TSS	Thymus	Thymus
33	chr4:15758800-15759200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
34	chr4:15758800-15759200	Enhancers	Primary T killer memory cells from peripheral blood	blood
35	chr4:15758800-15759200	Enhancers	HepG2	liver
36	chr4:15758800-15759400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr4:15758800-15759600	Enhancers	Primary T helper cells fromperipheralblood	blood
38	chr4:15758800-15759600	Enhancers	Fetal Thymus	thymus

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