Variant report

Variant	rs7659350
Chromosome Location	chr4:15786523-15786524
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10003282	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10005419	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11930435	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11946901	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13105588	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13117281	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28409825	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28703311	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4343722	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4377587	0.82[ASN][1000 genomes]
rs4698416	0.82[ASN][1000 genomes]
rs6449182	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66998564	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6834674	0.82[AMR][1000 genomes]
rs7674301	0.91[ASN][1000 genomes]
rs7681718	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv10460	chr4:15757611-15818206	ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1013204	chr4:15762970-15836237	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1010597	chr4:15776181-15836237	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7659350	CD38	cis	Nerve Tibial	GTEx

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15780200-15791600	Transcr. at gene 5' and 3'	Dnd41	blood
2	chr4:15781800-15792800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr4:15782000-15786600	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr4:15782000-15790000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr4:15782000-15794600	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr4:15783400-15787200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:15783400-15787400	Enhancers	Primary B cells from peripheral blood	blood
8	chr4:15783800-15786600	Enhancers	Duodenum Mucosa	Duodenum
9	chr4:15784000-15787000	Genic enhancers	Thymus	Thymus
10	chr4:15784800-15786800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr4:15784800-15787000	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr4:15784800-15789800	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr4:15785200-15795400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr4:15785800-15786600	Strong transcription	Primary hematopoietic stem cells	blood
15	chr4:15785800-15786600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr4:15786200-15787200	Enhancers	Primary B cells from cord blood	blood
17	chr4:15786200-15788200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr4:15786200-15788200	Weak transcription	Spleen	Spleen
19	chr4:15786200-15796000	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr4:15786400-15786800	Enhancers	GM12878-XiMat	blood
21	chr4:15786400-15788200	Strong transcription	Fetal Thymus	thymus
22	chr4:15786400-15789000	Weak transcription	Primary T cells from cord blood	blood
23	chr4:15786400-15794600	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr4:15786400-15807400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links