Variant report

Variant	rs6834674
Chromosome Location	chr4:15780539-15780540
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FBXL5-9	chr4:15779187-15780675	NONHSAT095646

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11946901	0.82[AMR][1000 genomes]
rs13105588	0.82[AMR][1000 genomes]
rs28703311	0.80[AMR][1000 genomes]
rs66998564	0.82[AMR][1000 genomes]
rs7659350	0.82[AMR][1000 genomes]
rs7668511	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7681718	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv10460	chr4:15757611-15818206	ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1013204	chr4:15762970-15836237	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1010597	chr4:15776181-15836237	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15779200-15781800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr4:15779400-15781800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr4:15779600-15781200	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr4:15779600-15781400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
5	chr4:15779600-15781600	Active TSS	Brain Germinal Matrix	brain
6	chr4:15779600-15781600	Active TSS	Brain Inferior Temporal Lobe	brain
7	chr4:15779600-15781600	Active TSS	Stomach Smooth Muscle	stomach
8	chr4:15779600-15781600	Active TSS	A549	lung
9	chr4:15779800-15780600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr4:15779800-15780600	Active TSS	Liver	Liver
11	chr4:15779800-15780800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:15779800-15780800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr4:15779800-15780800	Flanking Active TSS	Colonic Mucosa	Colon
14	chr4:15779800-15780800	Bivalent Enhancer	Fetal Brain Male	brain
15	chr4:15779800-15780800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
16	chr4:15779800-15780800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
17	chr4:15779800-15781000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
18	chr4:15779800-15781000	Active TSS	Breast Myoepithelial Primary Cells	Breast
19	chr4:15779800-15781200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
20	chr4:15779800-15781200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
21	chr4:15779800-15781400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
22	chr4:15779800-15781400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
23	chr4:15779800-15781400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr4:15779800-15781400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
25	chr4:15779800-15781400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
26	chr4:15779800-15781400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
27	chr4:15779800-15781400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
28	chr4:15779800-15781400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
29	chr4:15779800-15781400	Active TSS	Brain Anterior Caudate	brain
30	chr4:15779800-15781600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
31	chr4:15779800-15781600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr4:15779800-15781600	Active TSS	Brain Cingulate Gyrus	brain
33	chr4:15779800-15781600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
34	chr4:15779800-15781600	Active TSS	Duodenum Smooth Muscle	Duodenum
35	chr4:15779800-15781800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
36	chr4:15779800-15781800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
37	chr4:15779800-15781800	Flanking Active TSS	Adipose Nuclei	Adipose
38	chr4:15779800-15781800	Active TSS	Rectal Smooth Muscle	rectum
39	chr4:15779800-15782000	Flanking Active TSS	Primary B cells from cord blood	blood
40	chr4:15779800-15782600	Active TSS	Thymus	Thymus
41	chr4:15780000-15780600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr4:15780000-15780600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
43	chr4:15780000-15780600	Bivalent/Poised TSS	Fetal Stomach	stomach
44	chr4:15780000-15780600	Flanking Active TSS	Gastric	stomach
45	chr4:15780000-15780600	Flanking Bivalent TSS/Enh	HMEC	breast
46	chr4:15780000-15780600	Bivalent/Poised TSS	HSMM	muscle
47	chr4:15780000-15780600	Bivalent/Poised TSS	NH-A	brain
48	chr4:15780000-15780600	Bivalent/Poised TSS	Osteobl	bone
49	chr4:15780000-15780800	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr4:15780000-15780800	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived

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