Variant report

Variant	rs4698754
Chromosome Location	chr4:110793868-110793869
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11733805	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12642452	1.00[AFR][1000 genomes]
rs13102552	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13109893	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17040985	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs71591774	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7681517	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110780400-110795000	Weak transcription	Esophagus	oesophagus
2	chr4:110786200-110796600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:110789600-110794800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:110789600-110795800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr4:110789800-110798400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr4:110791600-110795600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr4:110791800-110794000	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr4:110791800-110795400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr4:110791800-110797200	Weak transcription	Primary T cells from cord blood	blood
10	chr4:110791800-110799600	Weak transcription	Brain Angular Gyrus	brain
11	chr4:110792000-110794000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr4:110793600-110794400	ZNF genes & repeats	Aorta	Aorta
13	chr4:110793600-110794600	Enhancers	Placenta Amnion	Placenta Amnion
14	chr4:110793600-110795000	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr4:110793800-110797600	Enhancers	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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