Variant report

Variant	rs12642452
Chromosome Location	chr4:110793068-110793069
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1029710	0.92[ASN][1000 genomes]
rs1029711	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11724973	0.92[ASN][1000 genomes]
rs11728826	0.82[EUR][1000 genomes]
rs11733397	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11937249	0.82[AMR][1000 genomes]
rs13102552	0.80[AFR][1000 genomes]
rs17040985	0.80[AFR][1000 genomes]
rs1990250	0.85[AMR][1000 genomes]
rs2190908	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2347129	0.84[AMR][1000 genomes]
rs35386791	0.84[AMR][1000 genomes]
rs4035486	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4698754	1.00[AFR][1000 genomes]
rs4698797	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6533469	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6533470	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6533471	0.92[ASN][1000 genomes]
rs6533472	0.92[ASN][1000 genomes]
rs6814789	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6827802	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7438763	0.85[AMR][1000 genomes]
rs764205	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7654140	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7654660	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7664699	0.85[AMR][1000 genomes]
rs7679303	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110780400-110795000	Weak transcription	Esophagus	oesophagus
2	chr4:110786200-110796600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:110789600-110794800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:110789600-110795800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr4:110789800-110793600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr4:110789800-110798400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr4:110791400-110793800	Weak transcription	Pancreas	Pancrea
8	chr4:110791600-110793200	Weak transcription	Adipose Nuclei	Adipose
9	chr4:110791600-110793200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr4:110791600-110793600	Weak transcription	Aorta	Aorta
11	chr4:110791600-110795600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr4:110791800-110793600	Weak transcription	Gastric	stomach
13	chr4:110791800-110794000	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr4:110791800-110795400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr4:110791800-110797200	Weak transcription	Primary T cells from cord blood	blood
16	chr4:110791800-110799600	Weak transcription	Brain Angular Gyrus	brain
17	chr4:110792000-110794000	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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