Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1029710	0.84[CEU][hapmap];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1029711	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11724973	0.88[CEU][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11733397	0.91[CEU][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12642452	0.82[EUR][1000 genomes]
rs34221791	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4698797	0.92[CEU][hapmap]
rs6533470	0.92[CEU][hapmap];0.90[CHB][hapmap]
rs6533471	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6533472	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6533473	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6811142	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6814789	0.92[CEU][hapmap]
rs6827802	0.92[CEU][hapmap]
rs764205	0.96[CEU][hapmap]
rs7654660	0.87[CEU][hapmap]
rs7679048	0.83[CEU][hapmap];0.90[CHB][hapmap]
rs7679303	0.92[CEU][hapmap];0.90[CHB][hapmap]
rs9307345	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9917904	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110791800-110799600	Weak transcription	Brain Angular Gyrus	brain
2	chr4:110796200-110800200	Weak transcription	Psoas Muscle	Psoas
3	chr4:110796600-110798600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:110796600-110798600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr4:110796600-110800200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr4:110797600-110799600	Weak transcription	Pancreas	Pancrea
7	chr4:110798400-110798600	Enhancers	GM12878-XiMat	blood
8	chr4:110798400-110798800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr4:110798400-110799000	Enhancers	Fetal Heart	heart
10	chr4:110798400-110799200	Enhancers	NHEK	skin

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