Variant report

Variant	rs6533473
Chromosome Location	chr4:110800594-110800595
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1029710	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1029711	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11724973	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11728826	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11733397	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34221791	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6533471	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6533472	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6811142	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9307345	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9917904	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110799600-110801800	Enhancers	Pancreas	Pancrea
2	chr4:110799600-110802000	Enhancers	Placenta	Placenta
3	chr4:110800200-110800600	Enhancers	Psoas Muscle	Psoas
4	chr4:110800200-110801600	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr4:110800200-110802400	Enhancers	Placenta Amnion	Placenta Amnion
6	chr4:110800400-110801600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:110800400-110807600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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