Variant report

Variant	rs6533471
Chromosome Location	chr4:110800372-110800373
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1029710	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1029711	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11724973	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11728826	0.97[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11733397	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12642452	0.92[ASN][1000 genomes]
rs34221791	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6533472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6533473	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6811142	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9307345	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9917904	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110799600-110801800	Enhancers	Pancreas	Pancrea
2	chr4:110799600-110802000	Enhancers	Placenta	Placenta
3	chr4:110800200-110800400	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr4:110800200-110800600	Enhancers	Psoas Muscle	Psoas
5	chr4:110800200-110801600	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr4:110800200-110802400	Enhancers	Placenta Amnion	Placenta Amnion

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links