Variant report

Variant	rs764205
Chromosome Location	chr4:110790911-110790912
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10020617	0.83[JPT][hapmap]
rs1029710	0.81[CEU][hapmap]
rs10365	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11724973	0.92[CEU][hapmap];0.87[CHB][hapmap]
rs11733397	0.87[CEU][hapmap]
rs11930428	0.90[ASN][1000 genomes]
rs11937249	0.84[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12510851	0.83[JPT][hapmap]
rs12642452	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13107617	0.83[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13128301	0.83[JPT][hapmap];0.90[ASN][1000 genomes]
rs1990250	0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2190908	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2347129	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3188897	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs35386791	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs35646628	0.90[ASN][1000 genomes]
rs4035486	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4698797	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6533469	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6533470	0.96[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6814789	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6827802	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7438763	0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7654140	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7654660	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7664699	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7679048	0.87[CEU][hapmap];0.84[AMR][1000 genomes]
rs7679303	0.96[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110780400-110795000	Weak transcription	Esophagus	oesophagus
2	chr4:110786000-110791000	Weak transcription	Primary T cells from cord blood	blood
3	chr4:110786200-110796600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:110786600-110791200	Weak transcription	Lung	lung
5	chr4:110789200-110791200	Weak transcription	Gastric	stomach
6	chr4:110789600-110791200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr4:110789600-110794800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:110789600-110795800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr4:110789800-110792400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr4:110789800-110793600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr4:110789800-110798400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr4:110790000-110792600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr4:110790400-110792800	Weak transcription	Brain Hippocampus Middle	brain
14	chr4:110790600-110791400	Strong transcription	Pancreas	Pancrea
15	chr4:110790600-110791600	ZNF genes & repeats	Brain Substantia Nigra	brain
16	chr4:110790600-110791600	Strong transcription	Stomach Smooth Muscle	stomach
17	chr4:110790600-110791800	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr4:110790600-110792000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
19	chr4:110790800-110791600	Strong transcription	Adipose Nuclei	Adipose
20	chr4:110790800-110791600	Strong transcription	Aorta	Aorta
21	chr4:110790800-110791600	Strong transcription	Skeletal Muscle Female	skeletal muscle
22	chr4:110790800-110791800	Strong transcription	Brain Angular Gyrus	brain

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