Variant report

Variant	rs6827802
Chromosome Location	chr4:110788540-110788541
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110783353..110785423-chr4:110787314..110788818,2	K562	blood:
2	chr4:110787222..110789645-chr4:110795273..110797757,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10365	0.80[CEU][hapmap];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11724973	0.88[CEU][hapmap];0.87[CHB][hapmap]
rs11733397	0.83[CEU][hapmap]
rs11930428	0.90[ASN][1000 genomes]
rs11937249	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12510851	0.80[JPT][hapmap]
rs12642452	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13107617	0.80[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13128301	0.80[JPT][hapmap];0.90[ASN][1000 genomes]
rs1990250	0.84[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2190908	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2347129	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3188897	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs35386791	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs35646628	0.90[ASN][1000 genomes]
rs4035486	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4698797	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6533469	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6533470	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6814789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7438763	0.84[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs764205	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7654140	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7654660	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7664699	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7679048	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7679303	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530156	chr4:110721397-110911297	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110780400-110795000	Weak transcription	Esophagus	oesophagus
2	chr4:110786000-110791000	Weak transcription	Primary T cells from cord blood	blood
3	chr4:110786200-110796600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:110786400-110790600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr4:110786600-110791200	Weak transcription	Lung	lung
6	chr4:110787200-110790800	Weak transcription	Brain Angular Gyrus	brain
7	chr4:110787400-110790600	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr4:110787800-110790000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr4:110787800-110790600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr4:110788200-110790800	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links