Variant report

Variant	rs4698769
Chromosome Location	chr4:110525744-110525745
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10024722	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11726776	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11732539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11734127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs197206	0.96[AFR][1000 genomes]
rs28826999	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33966365	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6825743	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71603037	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7677585	0.82[ASN][1000 genomes]
rs7683450	0.80[ASN][1000 genomes]
rs7687878	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7699284	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	esv3419480	chr4:110521397-110549622	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110510800-110530800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr4:110511000-110527200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr4:110512400-110530000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:110521800-110526600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr4:110521800-110529400	Weak transcription	Primary T cells from cord blood	blood
6	chr4:110522600-110531000	Weak transcription	Ovary	ovary
7	chr4:110523200-110526800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr4:110523200-110529400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr4:110523600-110526400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr4:110523600-110530000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr4:110524400-110528400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr4:110524600-110531200	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr4:110524800-110526800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr4:110524800-110527000	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr4:110524800-110531000	Weak transcription	Dnd41	blood
16	chr4:110525000-110530200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr4:110525000-110530800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr4:110525000-110530800	Weak transcription	Spleen	Spleen
19	chr4:110525200-110531000	Weak transcription	Thymus	Thymus
20	chr4:110525400-110526000	Weak transcription	Placenta	Placenta
21	chr4:110525600-110525800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
22	chr4:110525600-110525800	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr4:110525600-110526200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
24	chr4:110525600-110526200	Genic enhancers	Primary T helper cells fromperipheralblood	blood
25	chr4:110525600-110526800	Strong transcription	Primary B cells from cord blood	blood
26	chr4:110525600-110527200	Genic enhancers	Primary T helper cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links