Variant report

Variant	rs7677585
Chromosome Location	chr4:110546567-110546568
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11726776	0.80[ASN][1000 genomes]
rs11732539	0.82[ASN][1000 genomes]
rs11734127	0.82[ASN][1000 genomes]
rs28826999	0.82[ASN][1000 genomes]
rs33966365	0.82[ASN][1000 genomes]
rs4698769	0.82[ASN][1000 genomes]
rs6825743	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs71603037	0.80[ASN][1000 genomes]
rs7683450	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7687878	0.92[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7699284	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	esv3419480	chr4:110521397-110549622	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110531000-110550600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:110531600-110549600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr4:110533000-110573000	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr4:110533400-110552800	Weak transcription	Primary B cells from cord blood	blood
5	chr4:110534800-110547000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr4:110536000-110552800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr4:110536400-110552800	Weak transcription	Adipose Nuclei	Adipose
8	chr4:110536400-110552800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr4:110537400-110547200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:110538400-110552000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr4:110539400-110549200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr4:110539400-110550800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr4:110544200-110552800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr4:110544200-110552800	Weak transcription	Ovary	ovary
15	chr4:110545200-110552800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr4:110545400-110546800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr4:110545400-110552800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr4:110545800-110546600	Enhancers	Primary hematopoietic stem cells	blood
19	chr4:110546000-110546600	Enhancers	Thymus	Thymus
20	chr4:110546000-110547400	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr4:110546000-110549000	Weak transcription	Primary T cells from cord blood	blood
22	chr4:110546000-110559600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr4:110546200-110546600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr4:110546200-110546600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr4:110546200-110546600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr4:110546200-110546600	Weak transcription	Pancreas	Pancrea
27	chr4:110546200-110547000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr4:110546200-110548400	Weak transcription	Fetal Intestine Small	intestine
29	chr4:110546200-110548800	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr4:110546200-110549200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr4:110546200-110549200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr4:110546200-110550800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr4:110546200-110550800	Weak transcription	Esophagus	oesophagus
34	chr4:110546200-110550800	Weak transcription	Placenta	Placenta
35	chr4:110546200-110551000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr4:110546200-110552000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr4:110546200-110552600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr4:110546200-110552600	Weak transcription	Fetal Intestine Large	intestine
39	chr4:110546200-110552800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr4:110546200-110552800	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr4:110546200-110552800	Weak transcription	Small Intestine	intestine
42	chr4:110546200-110566400	Weak transcription	Fetal Thymus	thymus
43	chr4:110546400-110546800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr4:110546400-110550600	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr4:110546400-110552800	Weak transcription	Right Atrium	heart

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