Variant report

Variant	rs4698927
Chromosome Location	chr4:105852475-105852476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:105817994..105819899-chr4:105850760..105852852,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10005322	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10016801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10026528	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10032763	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12331635	0.82[AFR][1000 genomes]
rs1388035	0.88[AMR][1000 genomes]
rs1388036	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[AMR][1000 genomes]
rs1388038	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17035104	0.82[AFR][1000 genomes]
rs17035107	0.82[AFR][1000 genomes]
rs1994633	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1994634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1994635	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2087590	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28375724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28593451	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28611049	0.82[AFR][1000 genomes]
rs28821492	0.82[AFR][1000 genomes]
rs3943090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57379426	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58308342	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62329755	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62329756	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62331060	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62331061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62331063	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62331067	0.88[AMR][1000 genomes]
rs72949461	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7660636	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7690950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7691125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7691297	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9993343	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3341748	chr4:105569622-105903733	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv3388659	chr4:105613526-105882646	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:105849200-105852800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr4:105849200-105852800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr4:105850800-105852800	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr4:105851000-105853000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr4:105851000-105853200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr4:105851200-105852800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr4:105851400-105852600	Enhancers	Lung	lung
8	chr4:105851400-105852800	Enhancers	Primary T cells fromperipheralblood	blood
9	chr4:105851400-105852800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr4:105851400-105853000	Enhancers	Primary B cells from peripheral blood	blood
11	chr4:105851600-105852600	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr4:105851600-105852600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr4:105851600-105852600	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr4:105851600-105852600	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr4:105851600-105852600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr4:105851600-105852600	Enhancers	Dnd41	blood
17	chr4:105851600-105852600	Enhancers	HepG2	liver
18	chr4:105851600-105852600	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr4:105851600-105852800	Enhancers	Fetal Thymus	thymus
20	chr4:105851600-105853000	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr4:105851800-105852600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr4:105851800-105852600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr4:105851800-105852600	Enhancers	Stomach Mucosa	stomach
24	chr4:105851800-105852600	Enhancers	GM12878-XiMat	blood
25	chr4:105851800-105852800	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr4:105852000-105852600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr4:105852000-105853400	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr4:105852200-105852600	Active TSS	Primary T cells from cord blood	blood
29	chr4:105852200-105852600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr4:105852200-105852600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr4:105852200-105852600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
32	chr4:105852400-105852600	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr4:105852400-105852600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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