Variant report

Variant	rs1388036
Chromosome Location	chr4:105887763-105887764
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:105883010..105897017-chr4:106062943..106072055,55	MCF-7	breast:
2	chr4:105807196..105809660-chr4:105887378..105889912,4	MCF-7	breast:
3	chr4:105884036..105898505-chr4:106054854..106072562,138	MCF-7	breast:

Variant related genes	Relation type
ENSG00000251259	Chromatin interaction
ENSG00000244470	Chromatin interaction
ENSG00000168769	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10005322	0.83[AMR][1000 genomes]
rs10016801	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10026528	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10032763	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1388035	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1388038	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1994633	0.83[AMR][1000 genomes]
rs1994634	0.82[AMR][1000 genomes]
rs1994635	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2087590	0.83[AMR][1000 genomes]
rs28375724	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs28593451	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs3943090	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4698927	0.82[AMR][1000 genomes]
rs57379426	0.83[AMR][1000 genomes]
rs58308342	0.82[AMR][1000 genomes]
rs62329755	0.82[AMR][1000 genomes]
rs62329756	0.83[AMR][1000 genomes]
rs62331060	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62331061	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62331063	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs62331067	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72949461	0.83[AMR][1000 genomes]
rs7660636	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs7690950	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7691125	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7691297	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3341748	chr4:105569622-105903733	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv461609	chr4:105869548-106366209	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv470063	chr4:105869548-106366209	Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv595007	chr4:105869548-106366209	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv830024	chr4:105884350-106037816	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:105885200-105887800	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr4:105887000-105888600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr4:105887000-105889000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr4:105887200-105888400	Active TSS	Rectal Mucosa Donor 29	rectum
5	chr4:105887400-105888000	Enhancers	Primary B cells from peripheral blood	blood
6	chr4:105887400-105888600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr4:105887400-105888600	Active TSS	Rectal Mucosa Donor 31	rectum
8	chr4:105887600-105887800	Flanking Active TSS	GM12878-XiMat	blood
9	chr4:105887600-105887800	Enhancers	NHEK	skin
10	chr4:105887600-105888000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr4:105887600-105888000	Active TSS	Stomach Mucosa	stomach
12	chr4:105887600-105888200	Enhancers	Duodenum Mucosa	Duodenum
13	chr4:105887600-105888400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:105887600-105888400	Enhancers	Adipose Nuclei	Adipose
15	chr4:105887600-105888400	Enhancers	Fetal Lung	lung
16	chr4:105887600-105888400	Enhancers	Placenta Amnion	Placenta Amnion
17	chr4:105887600-105888600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr4:105887600-105888600	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr4:105887600-105888600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr4:105887600-105888600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr4:105887600-105888600	Enhancers	Fetal Intestine Large	intestine
22	chr4:105887600-105888600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr4:105887600-105888800	Enhancers	Primary hematopoietic stem cells	blood

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