Variant report

Variant	rs4699164
Chromosome Location	chr4:106105875-106105876
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:105818254..105820447-chr4:106104234..106105955,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12508009	0.88[CEU][hapmap]
rs17035325	0.81[YRI][hapmap]
rs17430146	1.00[CEU][hapmap]
rs17430167	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs17508289	1.00[CEU][hapmap];0.85[GIH][hapmap]
rs2214407	1.00[CEU][hapmap]
rs2866773	0.85[GIH][hapmap];0.93[TSI][hapmap]
rs4699166	0.88[CEU][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap]
rs7698522	1.00[CEU][hapmap];0.93[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461609	chr4:105869548-106366209	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv470063	chr4:105869548-106366209	Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv595007	chr4:105869548-106366209	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv830025	chr4:105988876-106137946	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106069400-106114200	Weak transcription	Esophagus	oesophagus
2	chr4:106070400-106107800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:106070400-106111600	Weak transcription	Placenta	Placenta
4	chr4:106077000-106112000	Weak transcription	Aorta	Aorta
5	chr4:106078000-106112800	Weak transcription	Fetal Kidney	kidney
6	chr4:106080600-106107800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr4:106083600-106109200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr4:106083800-106111400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr4:106084800-106127400	Weak transcription	Brain Germinal Matrix	brain
10	chr4:106085600-106112800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr4:106090600-106107000	Weak transcription	NH-A	brain
12	chr4:106092000-106110600	Weak transcription	Primary B cells from peripheral blood	blood
13	chr4:106093800-106111200	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr4:106093800-106112400	Weak transcription	Primary B cells from cord blood	blood
15	chr4:106094000-106112600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr4:106096200-106111600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr4:106096400-106111200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr4:106096600-106107200	Weak transcription	Psoas Muscle	Psoas
19	chr4:106098000-106111400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr4:106098200-106113200	Weak transcription	Fetal Stomach	stomach
21	chr4:106099000-106114200	Weak transcription	Gastric	stomach
22	chr4:106100800-106108000	Weak transcription	Osteobl	bone
23	chr4:106101000-106146600	Weak transcription	Spleen	Spleen
24	chr4:106101200-106112600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr4:106101200-106112800	Weak transcription	NHDF-Ad	bronchial
26	chr4:106101400-106112200	Weak transcription	Right Atrium	heart
27	chr4:106101600-106112800	Weak transcription	HSMM	muscle
28	chr4:106102000-106107200	Weak transcription	Ovary	ovary
29	chr4:106102200-106107800	Weak transcription	Brain Hippocampus Middle	brain
30	chr4:106102600-106112800	Weak transcription	HSMMtube	muscle
31	chr4:106102600-106113400	Weak transcription	K562	blood
32	chr4:106102800-106107800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr4:106102800-106127400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr4:106103000-106109000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr4:106103000-106111000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr4:106103600-106107800	Weak transcription	Pancreas	Pancrea
37	chr4:106103600-106112200	Weak transcription	Fetal Muscle Leg	muscle
38	chr4:106103800-106107400	Weak transcription	HMEC	breast
39	chr4:106104000-106107400	Enhancers	Primary neutrophils fromperipheralblood	blood
40	chr4:106104200-106107200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr4:106104800-106106200	ZNF genes & repeats	GM12878-XiMat	blood
42	chr4:106104800-106106400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr4:106104800-106106600	Enhancers	Primary T helper cells PMA-I stimulated	--
44	chr4:106104800-106117400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr4:106105000-106106200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr4:106105000-106106600	Enhancers	Primary T cells from cord blood	blood
47	chr4:106105000-106106600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr4:106105000-106106600	Enhancers	Primary T helper cells fromperipheralblood	blood
49	chr4:106105000-106108600	Enhancers	Stomach Mucosa	stomach
50	chr4:106105200-106106200	Enhancers	Small Intestine	intestine

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