Variant report

Variant	rs7698522
Chromosome Location	chr4:106118756-106118757
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106111372..106113018-chr4:106117335..106120192,2	MCF-7	breast:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10003144	0.92[ASN][1000 genomes]
rs10006632	0.92[ASN][1000 genomes]
rs10006721	0.92[ASN][1000 genomes]
rs10008189	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10017522	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10018267	1.00[ASN][1000 genomes]
rs10022126	0.92[ASN][1000 genomes]
rs10022891	0.92[ASN][1000 genomes]
rs10023701	1.00[ASN][1000 genomes]
rs10026237	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10027791	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10033325	0.92[ASN][1000 genomes]
rs11932794	0.89[ASN][1000 genomes]
rs11938493	1.00[ASN][1000 genomes]
rs11941838	0.92[ASN][1000 genomes]
rs11943394	0.92[ASN][1000 genomes]
rs11944001	0.92[ASN][1000 genomes]
rs11944085	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11947617	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs12499227	0.86[EUR][1000 genomes]
rs12505746	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12508009	0.88[CEU][hapmap]
rs17430146	1.00[CEU][hapmap]
rs17430167	1.00[CEU][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs17508289	1.00[CEU][hapmap];0.86[GIH][hapmap];0.84[EUR][1000 genomes]
rs2017763	0.92[ASN][1000 genomes]
rs2214407	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs28394039	0.92[ASN][1000 genomes]
rs2866773	0.86[GIH][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap]
rs28707121	1.00[ASN][1000 genomes]
rs3733609	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3796927	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4235413	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699164	1.00[CEU][hapmap];0.93[TSI][hapmap]
rs4699166	0.88[CEU][hapmap];0.85[MEX][hapmap];0.86[TSI][hapmap]
rs55793049	0.92[ASN][1000 genomes]
rs58862751	0.87[ASN][1000 genomes]
rs59339947	0.86[ASN][1000 genomes]
rs59806714	0.92[ASN][1000 genomes]
rs60886348	0.92[ASN][1000 genomes]
rs6826102	0.92[ASN][1000 genomes]
rs6831247	0.92[ASN][1000 genomes]
rs6831445	0.92[ASN][1000 genomes]
rs6833560	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[ASN][1000 genomes]
rs6835030	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6839609	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6843141	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6857812	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs72955167	0.92[ASN][1000 genomes]
rs72955198	0.92[ASN][1000 genomes]
rs73836047	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73836048	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73836052	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73836055	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73838074	0.92[ASN][1000 genomes]
rs7662448	0.92[ASN][1000 genomes]
rs7696287	0.92[ASN][1000 genomes]
rs7696337	0.92[ASN][1000 genomes]
rs7698398	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7700148	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs871215	0.92[ASN][1000 genomes]
rs931653	0.81[ASN][1000 genomes]
rs9985622	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9993497	0.89[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9997323	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9998069	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461609	chr4:105869548-106366209	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv470063	chr4:105869548-106366209	Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv595007	chr4:105869548-106366209	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv830025	chr4:105988876-106137946	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106084800-106127400	Weak transcription	Brain Germinal Matrix	brain
2	chr4:106101000-106146600	Weak transcription	Spleen	Spleen
3	chr4:106102800-106127400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:106106000-106135000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:106106200-106155000	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr4:106106600-106125800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr4:106108000-106123000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:106111000-106118800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:106111800-106127400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr4:106112200-106127200	Weak transcription	Primary T cells from cord blood	blood
11	chr4:106112400-106127000	Weak transcription	Fetal Muscle Leg	muscle
12	chr4:106112800-106127400	Weak transcription	Placenta	Placenta
13	chr4:106113000-106120400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr4:106113000-106126800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr4:106113000-106127200	Weak transcription	Fetal Muscle Trunk	muscle
16	chr4:106113000-106154800	Weak transcription	Fetal Thymus	thymus
17	chr4:106113200-106136000	Weak transcription	Brain Anterior Caudate	brain
18	chr4:106113200-106136000	Weak transcription	Brain Substantia Nigra	brain
19	chr4:106113200-106136800	Weak transcription	Fetal Kidney	kidney
20	chr4:106113200-106146600	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr4:106113400-106120600	Enhancers	Muscle Satellite Cultured Cells	--
22	chr4:106113400-106123800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr4:106113600-106136000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr4:106113600-106173800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr4:106113600-106195800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr4:106114200-106118800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr4:106114400-106129000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr4:106114400-106136200	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr4:106114400-106155200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr4:106114600-106119000	Weak transcription	Gastric	stomach
31	chr4:106114600-106127400	Weak transcription	Right Ventricle	heart
32	chr4:106114600-106127400	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr4:106114600-106127400	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr4:106114600-106134400	Weak transcription	Liver	Liver
35	chr4:106114600-106136000	Weak transcription	Pancreas	Pancrea
36	chr4:106114600-106145400	Weak transcription	Adipose Nuclei	Adipose
37	chr4:106114600-106155600	Weak transcription	Esophagus	oesophagus
38	chr4:106115000-106119000	Enhancers	NHLF	lung
39	chr4:106115200-106120000	Enhancers	HUVEC	blood vessel
40	chr4:106115600-106120000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr4:106116400-106130000	Weak transcription	HMEC	breast
42	chr4:106116400-106131600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr4:106116800-106120200	Enhancers	NHDF-Ad	bronchial
44	chr4:106117000-106118800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr4:106117000-106119000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
46	chr4:106117200-106118800	Enhancers	Fetal Heart	heart
47	chr4:106117200-106118800	Enhancers	Fetal Intestine Large	intestine
48	chr4:106117200-106119400	Enhancers	Primary monocytes fromperipheralblood	blood
49	chr4:106117200-106120000	Enhancers	Osteobl	bone
50	chr4:106117400-106118800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links