Variant report

Variant	rs7700148
Chromosome Location	chr4:106145430-106145431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10003144	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10006632	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10006721	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10008189	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10017522	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10018267	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10022126	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10022891	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10023701	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10026237	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10027791	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10033325	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11932794	0.97[ASN][1000 genomes]
rs11938493	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11941838	1.00[ASN][1000 genomes]
rs11943394	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11944001	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11944085	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11947617	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12505746	0.89[ASN][1000 genomes]
rs2017763	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28394039	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28655620	0.82[ASN][1000 genomes]
rs28707121	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3733609	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3796927	0.86[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4235413	0.92[ASN][1000 genomes]
rs55793049	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58862751	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59339947	0.95[ASN][1000 genomes]
rs59806714	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60886348	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6826102	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6831247	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6831445	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6833560	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6835030	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6839609	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6843141	0.86[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];1.00[ASN][1000 genomes]
rs6857812	0.86[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72955167	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72955198	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73836047	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73836048	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73836052	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73836055	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73838074	1.00[ASN][1000 genomes]
rs7662448	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7696287	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7696337	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7698398	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7698522	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs871215	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs931653	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9985622	0.92[ASN][1000 genomes]
rs9993497	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9997323	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9998069	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461609	chr4:105869548-106366209	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv470063	chr4:105869548-106366209	Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv595007	chr4:105869548-106366209	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106101000-106146600	Weak transcription	Spleen	Spleen
2	chr4:106106200-106155000	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr4:106113000-106154800	Weak transcription	Fetal Thymus	thymus
4	chr4:106113200-106146600	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr4:106113600-106173800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr4:106113600-106195800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr4:106114400-106155200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr4:106114600-106155600	Weak transcription	Esophagus	oesophagus
9	chr4:106118000-106155400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr4:106118800-106155000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr4:106118800-106155200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr4:106127600-106146600	Weak transcription	Left Ventricle	heart
13	chr4:106127600-106155000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr4:106127600-106155400	Weak transcription	Placenta	Placenta
15	chr4:106127800-106155200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr4:106127800-106155200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr4:106128000-106154000	Weak transcription	Primary B cells from peripheral blood	blood
18	chr4:106131800-106155000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr4:106132000-106153200	Weak transcription	Primary hematopoietic stem cells	blood
20	chr4:106132400-106146600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr4:106132400-106154600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr4:106133400-106155000	Weak transcription	Fetal Lung	lung
23	chr4:106133800-106155000	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr4:106135200-106155000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr4:106135200-106155000	Weak transcription	Fetal Muscle Trunk	muscle
26	chr4:106135800-106146600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr4:106136000-106155000	Weak transcription	Fetal Stomach	stomach
28	chr4:106136000-106157400	Weak transcription	Right Ventricle	heart
29	chr4:106136200-106146600	Weak transcription	Psoas Muscle	Psoas
30	chr4:106136400-106146800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr4:106136400-106155000	Weak transcription	Fetal Muscle Leg	muscle
32	chr4:106136800-106155200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr4:106137000-106155200	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr4:106137400-106155200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr4:106137600-106155000	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr4:106137600-106155400	Weak transcription	HSMM	muscle
37	chr4:106137600-106155600	Weak transcription	Fetal Intestine Small	intestine
38	chr4:106137800-106155000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr4:106137800-106155000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr4:106138200-106155000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr4:106138400-106155200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr4:106139000-106155200	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr4:106139200-106155200	Weak transcription	Fetal Intestine Large	intestine
44	chr4:106139600-106146600	Weak transcription	Primary B cells from cord blood	blood
45	chr4:106140000-106155000	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr4:106141000-106155600	Weak transcription	Gastric	stomach
47	chr4:106142000-106147600	Weak transcription	Aorta	Aorta
48	chr4:106142000-106155000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr4:106142000-106155400	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr4:106142000-106190800	Weak transcription	Small Intestine	intestine

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