Variant report

Variant	rs4699346
Chromosome Location	chr4:99466870-99466871
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:99459317..99461488-chr4:99464335..99467316,2	K562	blood:
2	chr4:99463140..99464695-chr4:99465921..99468144,2	K562	blood:
3	chr4:99465722..99468319-chr4:99566226..99568875,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11097621	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13114571	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13132635	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13134231	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1919211	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4699650	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4699651	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699652	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6532742	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6532744	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6532745	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6532747	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6532748	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6827510	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6831464	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6831643	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6846287	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6854339	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754250	chr4:99094922-99527122	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1004181	chr4:99208152-99529576	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2760882	chr4:99460485-99521345	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99446000-99467400	Weak transcription	Fetal Stomach	stomach
2	chr4:99449800-99467400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:99450200-99467400	Weak transcription	Osteobl	bone
4	chr4:99450800-99468000	Weak transcription	HSMM	muscle
5	chr4:99459000-99468000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr4:99459200-99468000	Weak transcription	Esophagus	oesophagus
7	chr4:99459200-99479600	Weak transcription	Spleen	Spleen
8	chr4:99459600-99467800	Weak transcription	NHLF	lung
9	chr4:99461000-99467400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:99463400-99467600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:99463600-99467600	Weak transcription	HMEC	breast
12	chr4:99463800-99478800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:99464000-99468000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:99464800-99467800	Enhancers	Fetal Brain Female	brain
15	chr4:99464800-99468000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr4:99465000-99468400	Enhancers	Fetal Brain Male	brain
17	chr4:99465400-99467000	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr4:99465400-99467600	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr4:99465400-99467800	Enhancers	Brain Angular Gyrus	brain
20	chr4:99465400-99467800	Enhancers	Fetal Lung	lung
21	chr4:99465800-99467400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr4:99465800-99467400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr4:99465800-99467800	Weak transcription	Aorta	Aorta
24	chr4:99466000-99467400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr4:99466200-99467400	Weak transcription	Brain Anterior Caudate	brain
26	chr4:99466200-99467400	Weak transcription	Ovary	ovary
27	chr4:99466200-99467400	Weak transcription	NHDF-Ad	bronchial
28	chr4:99466200-99467800	Weak transcription	Fetal Heart	heart
29	chr4:99466400-99467200	Weak transcription	Brain Germinal Matrix	brain
30	chr4:99466400-99467400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr4:99466400-99467400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr4:99466400-99467400	Weak transcription	Brain Hippocampus Middle	brain
33	chr4:99466400-99467400	Weak transcription	Fetal Muscle Leg	muscle
34	chr4:99466400-99467800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr4:99466400-99467800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr4:99466400-99468000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr4:99466400-99468000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr4:99466400-99477000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr4:99466600-99468000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr4:99466600-99479800	Weak transcription	Fetal Thymus	thymus
41	chr4:99466800-99467200	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr4:99466800-99467200	Weak transcription	Brain Substantia Nigra	brain
43	chr4:99466800-99467800	Weak transcription	Left Ventricle	heart
44	chr4:99466800-99467800	Weak transcription	HUVEC	blood vessel
45	chr4:99466800-99501600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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