Variant report

Variant	rs6532747
Chromosome Location	chr4:99467846-99467847
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99463140..99464695-chr4:99465921..99468144,2	K562	blood:
2	chr4:99465722..99468319-chr4:99566226..99568875,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11097621	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13114571	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13132635	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13134231	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1919211	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4699346	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4699650	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4699651	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4699652	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6532742	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6532744	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6532745	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6532748	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6827510	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6831464	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6831643	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6846287	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6854339	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754250	chr4:99094922-99527122	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1004181	chr4:99208152-99529576	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2760882	chr4:99460485-99521345	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99450800-99468000	Weak transcription	HSMM	muscle
2	chr4:99459000-99468000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:99459200-99468000	Weak transcription	Esophagus	oesophagus
4	chr4:99459200-99479600	Weak transcription	Spleen	Spleen
5	chr4:99463800-99478800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:99464000-99468000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:99464800-99468000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr4:99465000-99468400	Enhancers	Fetal Brain Male	brain
9	chr4:99466400-99468000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:99466400-99468000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:99466400-99477000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:99466600-99468000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr4:99466600-99479800	Weak transcription	Fetal Thymus	thymus
14	chr4:99466800-99501600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr4:99467200-99468000	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr4:99467400-99468000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr4:99467400-99468000	Enhancers	Fetal Muscle Leg	muscle
18	chr4:99467400-99468000	Enhancers	Fetal Stomach	stomach
19	chr4:99467400-99468200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr4:99467600-99468000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr4:99467600-99468000	Flanking Active TSS	Colon Smooth Muscle	Colon
22	chr4:99467600-99468200	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr4:99467600-99468400	Active TSS	NHDF-Ad	bronchial
24	chr4:99467600-99468600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
25	chr4:99467600-99468800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr4:99467600-99468800	Active TSS	Stomach Smooth Muscle	stomach
27	chr4:99467800-99468000	Enhancers	Adipose Nuclei	Adipose
28	chr4:99467800-99468000	Flanking Active TSS	Brain Cingulate Gyrus	brain
29	chr4:99467800-99468000	Flanking Active TSS	Brain Hippocampus Middle	brain
30	chr4:99467800-99468000	Flanking Active TSS	Fetal Lung	lung
31	chr4:99467800-99468000	Enhancers	Left Ventricle	heart
32	chr4:99467800-99468000	Enhancers	HUVEC	blood vessel
33	chr4:99467800-99468000	Enhancers	NH-A	brain
34	chr4:99467800-99468000	Flanking Active TSS	Osteobl	bone
35	chr4:99467800-99468200	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr4:99467800-99468200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr4:99467800-99468200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr4:99467800-99468200	Active TSS	Brain Substantia Nigra	brain
39	chr4:99467800-99468200	Flanking Active TSS	Rectal Smooth Muscle	rectum
40	chr4:99467800-99468400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
41	chr4:99467800-99468400	Enhancers	Fetal Heart	heart
42	chr4:99467800-99468400	Active TSS	Right Ventricle	heart
43	chr4:99467800-99468400	Flanking Active TSS	HMEC	breast
44	chr4:99467800-99468600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr4:99467800-99468600	Enhancers	iPS-18 Cell Line	embryonic stem cell
46	chr4:99467800-99468600	Flanking Active TSS	Brain Germinal Matrix	brain
47	chr4:99467800-99468600	Active TSS	Pancreatic Islets	Pancreatic Islet
48	chr4:99467800-99468600	Active TSS	Rectal Mucosa Donor 29	rectum
49	chr4:99467800-99468600	Active TSS	Right Atrium	heart
50	chr4:99467800-99468600	Active TSS	Skeletal Muscle Male	skeletal muscle

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