Variant report

Variant	rs4699614
Chromosome Location	chr4:99120881-99120882
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:99120152..99122281-chr4:99124783..99127768,2	K562	blood:
2	chr4:99071301..99072792-chr4:99120456..99121365,4	MCF-7	breast:
3	chr4:99118953..99122803-chr4:99123376..99126878,4	MCF-7	breast:

Extended variants
information (count: 128 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:117)

rs_ID	r²[population]
rs10002767	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10003517	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10005811	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10006820	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10014034	1.00[CHB][hapmap]
rs10018670	0.93[ASN][1000 genomes]
rs10022047	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10028275	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10028373	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10029454	0.85[ASN][1000 genomes]
rs10470895	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10470952	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10516429	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12498437	0.85[ASN][1000 genomes]
rs12498440	1.00[JPT][hapmap]
rs12498745	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12499136	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12499530	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12500412	0.85[CHB][hapmap]
rs12500533	0.96[ASN][1000 genomes]
rs12501974	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12503117	0.85[ASN][1000 genomes]
rs12503806	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12507425	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12507859	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12508445	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12509125	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12509417	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12510055	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12510670	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12511262	0.84[AMR][1000 genomes]
rs12512117	0.85[ASN][1000 genomes]
rs13353584	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1453344	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1453345	0.85[ASN][1000 genomes]
rs1580065	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1580066	0.85[ASN][1000 genomes]
rs17027330	0.93[ASN][1000 genomes]
rs17027331	0.93[ASN][1000 genomes]
rs17027339	0.93[ASN][1000 genomes]
rs17027386	0.85[ASN][1000 genomes]
rs17027412	0.85[ASN][1000 genomes]
rs17027449	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17027452	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17027530	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17027532	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17027533	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17027543	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17027545	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17027549	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17027552	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1913489	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1913490	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2042653	0.85[ASN][1000 genomes]
rs2042654	0.85[ASN][1000 genomes]
rs2063746	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2081490	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2194896	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs28409461	0.93[ASN][1000 genomes]
rs28470922	0.85[ASN][1000 genomes]
rs28472839	1.00[ASN][1000 genomes]
rs28484692	0.85[ASN][1000 genomes]
rs28536684	0.85[ASN][1000 genomes]
rs28540371	0.93[ASN][1000 genomes]
rs28603037	0.93[ASN][1000 genomes]
rs28612663	0.85[ASN][1000 genomes]
rs28613236	0.93[ASN][1000 genomes]
rs28644420	0.85[ASN][1000 genomes]
rs28703816	0.85[ASN][1000 genomes]
rs28715883	0.85[ASN][1000 genomes]
rs3775538	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3822115	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3974886	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4321644	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs4557264	0.85[ASN][1000 genomes]
rs4593139	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4699334	0.85[ASN][1000 genomes]
rs4699335	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4699336	0.85[ASN][1000 genomes]
rs4699338	0.85[ASN][1000 genomes]
rs4699616	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4699617	0.85[ASN][1000 genomes]
rs4699622	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4699623	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6532732	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6811422	0.96[ASN][1000 genomes]
rs6814081	0.93[ASN][1000 genomes]
rs6814168	0.93[ASN][1000 genomes]
rs6820913	0.93[ASN][1000 genomes]
rs6821608	0.93[ASN][1000 genomes]
rs6822914	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6828936	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6831490	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6831730	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6833504	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6835411	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6846417	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs72894301	0.82[ASN][1000 genomes]
rs72898360	1.00[ASN][1000 genomes]
rs72898390	0.93[ASN][1000 genomes]
rs72898391	0.93[ASN][1000 genomes]
rs7654497	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7655147	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7655427	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7656017	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7663435	0.93[ASN][1000 genomes]
rs7676060	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7683964	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7687685	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7692963	0.85[ASN][1000 genomes]
rs7694221	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7695463	0.85[ASN][1000 genomes]
rs890207	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs919027	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs919028	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9990962	0.85[ASN][1000 genomes]
rs9992518	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529623	chr4:98501338-99460166	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1000956	chr4:98732458-99178588	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1001570	chr4:98976239-99239838	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv879650	chr4:99057457-99172232	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv461595	chr4:99065480-99172175	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv594939	chr4:99065480-99172175	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv470061	chr4:99078105-99160699	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1004616	chr4:99085875-99308901	Genic enhancers Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	esv2763801	chr4:99094892-99413853	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	esv2754250	chr4:99094922-99527122	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
11	nsv879651	chr4:99105055-99441349	Weak transcription Genic enhancers Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99118800-99122600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:99119800-99122200	Weak transcription	Primary B cells from peripheral blood	blood

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