Variant report

Variant	rs4699733
Chromosome Location	chr4:100137534-100137535
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10002894	1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1154404	1.00[CHB][hapmap]
rs1229967	0.86[ASN][1000 genomes]
rs1229969	0.86[ASN][1000 genomes]
rs1229970	0.86[ASN][1000 genomes]
rs1229976	0.86[ASN][1000 genomes]
rs1229977	0.86[ASN][1000 genomes]
rs1230019	0.86[ASN][1000 genomes]
rs1230020	0.86[ASN][1000 genomes]
rs1230022	0.86[ASN][1000 genomes]
rs1230025	0.86[ASN][1000 genomes]
rs1230026	0.86[ASN][1000 genomes]
rs1230027	0.86[ASN][1000 genomes]
rs1230028	0.86[ASN][1000 genomes]
rs1497375	0.86[ASN][1000 genomes]
rs1618572	0.86[ASN][1000 genomes]
rs1693457	0.82[JPT][hapmap]
rs1893883	1.00[CHB][hapmap]
rs2173200	0.86[ASN][1000 genomes]
rs2187483	1.00[CHB][hapmap]
rs2646009	0.86[ASN][1000 genomes]
rs2646011	0.86[ASN][1000 genomes]
rs2851291	0.86[ASN][1000 genomes]
rs2866149	0.86[ASN][1000 genomes]
rs3857224	1.00[CHB][hapmap]
rs4147536	0.82[JPT][hapmap]
rs4147544	1.00[CHB][hapmap]
rs4147545	1.00[CHB][hapmap]
rs4147547	1.00[CHB][hapmap]
rs4355398	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4699737	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs62305755	0.86[ASN][1000 genomes]
rs6532810	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6532811	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6532813	0.86[ASN][1000 genomes]
rs6830685	1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6833176	1.00[CHB][hapmap]
rs7656223	0.86[ASN][1000 genomes]
rs7669784	0.86[ASN][1000 genomes]
rs7673231	0.86[ASN][1000 genomes]
rs7684914	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs904092	0.82[JPT][hapmap]
rs9307238	1.00[CHB][hapmap]
rs931635	1.00[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv1002927	chr4:99952472-100148690	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv879656	chr4:99976646-100533722	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	esv3355763	chr4:100070566-100376814	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv879657	chr4:100082154-100139366	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1014237	chr4:100102701-100365700	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1010988	chr4:100105463-100444445	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv1000659	chr4:100117276-100444445	Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv999549	chr4:100121609-100351749	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv967966	chr4:100132047-100138970	ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100108400-100141600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:100127000-100139000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:100127000-100139400	Weak transcription	Ovary	ovary
4	chr4:100127000-100140200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr4:100127000-100142600	Weak transcription	Small Intestine	intestine
6	chr4:100127400-100139000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr4:100127600-100138800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr4:100129000-100143200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr4:100131400-100143000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:100133000-100140600	Weak transcription	Fetal Lung	lung
11	chr4:100134600-100137600	Genic enhancers	Liver	Liver
12	chr4:100137000-100138600	Weak transcription	HepG2	liver
13	chr4:100137400-100137600	Enhancers	Fetal Muscle Leg	muscle

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