Variant report

Variant	rs4700784
Chromosome Location	chr5:178581977-178581978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10038655	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10041737	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10079886	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11746123	0.99[ASN][1000 genomes]
rs11746863	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11951329	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11955365	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2303637	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2411908	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3797596	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3822596	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4701055	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4701059	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4701060	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4701061	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4701064	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9286045	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9286046	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024560	chr5:178415364-178917595	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv537975	chr5:178415364-178917595	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv817413	chr5:178415365-179020558	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
4	nsv1033597	chr5:178423101-178752095	Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1031829	chr5:178442633-178658706	Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Enhancers Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv482750	chr5:178482653-178663586	Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1026790	chr5:178511268-178687428	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv482352	chr5:178525060-178697496	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv883222	chr5:178540975-178595870	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	nsv1016097	chr5:178544084-178866001	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv1026968	chr5:178545479-178865895	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	nsv537976	chr5:178545479-178865895	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	nsv600496	chr5:178552518-178752351	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	nsv883223	chr5:178576631-178630445	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178549400-178590800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr5:178551600-178582800	Weak transcription	Right Atrium	heart
3	chr5:178554000-178587800	Weak transcription	Colonic Mucosa	Colon
4	chr5:178557000-178585400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr5:178565200-178582600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:178567000-178594000	Weak transcription	Gastric	stomach
7	chr5:178570800-178593800	Weak transcription	NHDF-Ad	bronchial
8	chr5:178573600-178582800	Weak transcription	Fetal Brain Male	brain
9	chr5:178574400-178586400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:178574600-178583000	Weak transcription	Liver	Liver
11	chr5:178574600-178583400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:178574800-178583000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr5:178574800-178590400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr5:178575000-178583400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:178575000-178589400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr5:178575200-178583200	Strong transcription	Fetal Stomach	stomach
17	chr5:178575200-178587000	Strong transcription	Osteobl	bone
18	chr5:178575600-178583200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr5:178575600-178583200	Strong transcription	Adipose Nuclei	Adipose
20	chr5:178575800-178582400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr5:178575800-178583000	Strong transcription	Muscle Satellite Cultured Cells	--
22	chr5:178576200-178582000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr5:178576200-178582000	Strong transcription	NHLF	lung
24	chr5:178578400-178587800	Weak transcription	Fetal Intestine Small	intestine
25	chr5:178578600-178582000	Genic enhancers	Spleen	Spleen
26	chr5:178578600-178582800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr5:178580600-178589000	Weak transcription	Aorta	Aorta
28	chr5:178580800-178582600	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr5:178580800-178586000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr5:178581000-178584200	Weak transcription	Fetal Lung	lung
31	chr5:178581200-178582400	Enhancers	Placenta	Placenta
32	chr5:178581200-178582600	Weak transcription	HSMM	muscle
33	chr5:178581200-178584000	Weak transcription	Small Intestine	intestine
34	chr5:178581400-178582600	Genic enhancers	Fetal Muscle Trunk	muscle
35	chr5:178581600-178582000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr5:178581600-178582400	Enhancers	Lung	lung
37	chr5:178581800-178582000	Genic enhancers	Fetal Muscle Leg	muscle
38	chr5:178581800-178582200	Weak transcription	Ovary	ovary
39	chr5:178581800-178583000	Strong transcription	HSMMtube	muscle

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