Variant report

Variant	rs4706880
Chromosome Location	chr6:81882284-81882285
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12208769	0.85[ASN][1000 genomes]
rs1443878	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1776426	0.82[ASN][1000 genomes]
rs1776427	0.82[ASN][1000 genomes]
rs2120400	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2197299	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs310402	0.84[ASN][1000 genomes]
rs310403	0.83[ASN][1000 genomes]
rs310404	0.82[ASN][1000 genomes]
rs310405	0.83[ASN][1000 genomes]
rs310406	0.83[ASN][1000 genomes]
rs310407	0.85[ASN][1000 genomes]
rs310408	0.85[ASN][1000 genomes]
rs310412	0.85[ASN][1000 genomes]
rs310415	0.83[ASN][1000 genomes]
rs310417	0.83[ASN][1000 genomes]
rs310418	0.82[ASN][1000 genomes]
rs310419	0.83[ASN][1000 genomes]
rs310420	0.83[ASN][1000 genomes]
rs310421	0.83[ASN][1000 genomes]
rs310422	0.83[ASN][1000 genomes]
rs310425	0.83[ASN][1000 genomes]
rs310426	0.82[ASN][1000 genomes]
rs555324	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6454207	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6901290	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6906411	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6910337	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6937689	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7757493	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9344117	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9361763	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886315	chr6:81352515-81946866	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv886320	chr6:81670720-81960107	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv886321	chr6:81707510-81934605	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv830710	chr6:81727702-81889039	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv830711	chr6:81771575-81937222	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv463936	chr6:81784903-81893325	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv604086	chr6:81784903-81893325	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv886327	chr6:81820941-81934605	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1019897	chr6:81830043-81896664	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81880200-81882600	Enhancers	Colon Smooth Muscle	Colon
2	chr6:81881400-81882600	Enhancers	Osteobl	bone
3	chr6:81881400-81882800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr6:81881400-81884600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:81881600-81882400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:81881600-81882400	Enhancers	Brain Substantia Nigra	brain
7	chr6:81881600-81882400	Enhancers	Rectal Smooth Muscle	rectum
8	chr6:81881600-81882400	Enhancers	HSMM	muscle
9	chr6:81881800-81882400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr6:81881800-81882400	Enhancers	Brain Anterior Caudate	brain
11	chr6:81881800-81882400	Enhancers	NHLF	lung
12	chr6:81881800-81882600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr6:81881800-81882600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr6:81881800-81882600	Enhancers	HSMMtube	muscle
15	chr6:81882000-81882800	Enhancers	NHDF-Ad	bronchial
16	chr6:81882200-81882400	Enhancers	Aorta	Aorta
17	chr6:81882200-81882400	Flanking Active TSS	Ovary	ovary
18	chr6:81882200-81882400	Flanking Active TSS	Stomach Smooth Muscle	stomach
19	chr6:81882200-81883800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr6:81882200-81884000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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