Variant report

Variant	rs12208769
Chromosome Location	chr6:81797142-81797143
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1443878	0.85[ASN][1000 genomes]
rs1776426	0.97[ASN][1000 genomes]
rs1776427	0.97[ASN][1000 genomes]
rs2120400	0.89[ASN][1000 genomes]
rs218874	0.81[ASN][1000 genomes]
rs2197299	0.89[ASN][1000 genomes]
rs310387	0.92[ASN][1000 genomes]
rs310389	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs310392	0.84[ASN][1000 genomes]
rs310393	0.84[ASN][1000 genomes]
rs310394	0.84[ASN][1000 genomes]
rs310395	0.84[ASN][1000 genomes]
rs310396	0.84[ASN][1000 genomes]
rs310397	0.84[ASN][1000 genomes]
rs310398	0.84[ASN][1000 genomes]
rs310400	0.84[ASN][1000 genomes]
rs310401	0.84[ASN][1000 genomes]
rs310402	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs310403	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs310404	0.97[ASN][1000 genomes]
rs310405	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs310406	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs310407	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs310408	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs310409	0.84[ASN][1000 genomes]
rs310411	0.84[ASN][1000 genomes]
rs310412	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs310414	0.82[ASN][1000 genomes]
rs310415	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs310416	0.82[ASN][1000 genomes]
rs310417	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs310418	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs310419	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs310420	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs310421	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs310422	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs310424	0.82[ASN][1000 genomes]
rs310425	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs310426	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4706880	0.85[ASN][1000 genomes]
rs555324	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6454207	0.89[ASN][1000 genomes]
rs6901290	0.89[ASN][1000 genomes]
rs6910337	0.86[ASN][1000 genomes]
rs6937689	0.89[ASN][1000 genomes]
rs7757493	0.89[ASN][1000 genomes]
rs9344117	0.89[ASN][1000 genomes]
rs9361763	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv886315	chr6:81352515-81946866	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886320	chr6:81670720-81960107	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886321	chr6:81707510-81934605	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1016229	chr6:81722231-81881073	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv830710	chr6:81727702-81889039	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1033949	chr6:81731577-81872706	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv886322	chr6:81745936-81812816	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1021359	chr6:81763673-81819933	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv886323	chr6:81769638-81841444	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv886324	chr6:81769638-81848131	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv830711	chr6:81771575-81937222	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv886325	chr6:81777045-81848131	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv463936	chr6:81784903-81893325	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv604086	chr6:81784903-81893325	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv886326	chr6:81786684-81841444	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
17	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81786200-81800200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:81796200-81797600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:81796400-81797600	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:81796800-81797400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr6:81796800-81797400	Enhancers	Fetal Lung	lung
6	chr6:81796800-81797600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr6:81797000-81797200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:81797000-81797400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr6:81797000-81797800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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