Variant report
| Variant | rs4707130 |
|---|---|
| Chromosome Location | chr6:85877043-85877044 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:85871743..85874419-chr6:85874787..85877545,2 | K562 | blood: |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-NT5E-6 | chr6:85876897-85877250 | NONHSAT113832 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs1358838 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs1853135 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2025015 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs4707131 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs515583 | 1.00[ASN][1000 genomes] |
| rs537157 | 0.81[ASN][1000 genomes] |
| rs6911391 | 0.82[TSI][hapmap] |
| rs9344466 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs9362142 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1017418 | chr6:85344786-86259540 | Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
| 2 | nsv538347 | chr6:85344786-86259540 | Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
