Variant report

Variant	rs9344466
Chromosome Location	chr6:85897264-85897265
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12193273	1.00[ASN][1000 genomes]
rs12198005	1.00[ASN][1000 genomes]
rs1358838	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1853135	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1853136	1.00[ASN][1000 genomes]
rs2025015	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35175827	1.00[ASN][1000 genomes]
rs4394181	1.00[ASN][1000 genomes]
rs4707130	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4707131	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs480673	0.95[ASN][1000 genomes]
rs6937285	1.00[ASN][1000 genomes]
rs9362141	1.00[ASN][1000 genomes]
rs9362142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9444303	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017418	chr6:85344786-86259540	Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv538347	chr6:85344786-86259540	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv965655	chr6:85892490-85900588	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:85894400-85898400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:85895200-85897800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:85895400-85898000	Enhancers	NHDF-Ad	bronchial
4	chr6:85895400-85898200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:85895800-85897400	Enhancers	HMEC	breast
6	chr6:85896000-85897400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:85896000-85897600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:85896000-85898000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr6:85896000-85898200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:85896400-85898400	Enhancers	Osteobl	bone
11	chr6:85896600-85897400	Enhancers	Fetal Muscle Leg	muscle
12	chr6:85896600-85898200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:85896800-85898200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:85896800-85898400	Weak transcription	HUVEC	blood vessel
15	chr6:85896800-85901600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr6:85897200-85897400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:85897200-85897800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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