Variant report

Variant	rs4708015
Chromosome Location	chr6:73752010-73752011
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10943077	0.89[ASN][1000 genomes]
rs1935541	0.93[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2153840	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2185770	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3798465	0.87[MEX][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4401620	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4706525	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4708012	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4708016	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7752262	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760183	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7764774	0.86[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs7770061	1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9342997	0.82[JPT][hapmap];0.87[MEX][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9446827	0.91[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73743000-73772000	Weak transcription	HSMM	muscle
2	chr6:73746400-73759600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:73749000-73765200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:73749200-73753000	Weak transcription	Primary T cells from cord blood	blood
5	chr6:73749600-73755000	Weak transcription	Primary B cells from peripheral blood	blood
6	chr6:73750200-73764000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:73750400-73754600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:73751200-73752800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr6:73751200-73755200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:73751400-73752200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:73751400-73755200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr6:73751400-73759000	Weak transcription	Aorta	Aorta
13	chr6:73751600-73752600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:73751600-73753600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:73751800-73754600	Weak transcription	HSMMtube	muscle
16	chr6:73751800-73754800	Strong transcription	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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