Variant report

Variant	rs9342997
Chromosome Location	chr6:73757091-73757092
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1935541	0.82[JPT][hapmap];0.82[AMR][1000 genomes]
rs2153840	0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2185770	0.82[JPT][hapmap];0.83[MEX][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3798465	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4706525	0.82[JPT][hapmap];0.82[AMR][1000 genomes]
rs4708012	0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4708015	0.82[JPT][hapmap];0.87[MEX][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4708016	0.82[AMR][1000 genomes]
rs7752262	0.82[JPT][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7760183	0.86[CHB][hapmap];0.80[JPT][hapmap]
rs7764774	0.86[JPT][hapmap];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7770061	0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9446827	0.82[CHB][hapmap];0.83[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73743000-73772000	Weak transcription	HSMM	muscle
2	chr6:73746400-73759600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:73749000-73765200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:73750200-73764000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:73751400-73759000	Weak transcription	Aorta	Aorta
6	chr6:73752200-73757400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:73752600-73760800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:73753600-73774800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:73754800-73766200	Weak transcription	Primary B cells from cord blood	blood
10	chr6:73757000-73758400	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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