Variant report

Variant	rs4709400
Chromosome Location	chr6:160543610-160543611
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:160536246..160537830-chr6:160543511..160545269,2	K562	blood:
2	chr6:160539183..160541787-chr6:160543102..160544828,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1479355	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1867351	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2297369	0.83[ASN][1000 genomes]
rs2297370	1.00[CEU][hapmap]
rs2297371	1.00[CEU][hapmap]
rs2297372	0.84[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs3798173	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs3822841	1.00[CEU][hapmap]
rs4646272	0.94[ASN][1000 genomes]
rs4709399	0.84[CEU][hapmap];0.87[ASN][1000 genomes]
rs6900842	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6935207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs755884	0.85[CEU][hapmap];0.86[CHB][hapmap];0.83[ASN][1000 genomes]
rs7753051	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7769472	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9346808	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9347385	0.81[AMR][1000 genomes]
rs9355776	0.81[AMR][1000 genomes]
rs9365131	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9365132	0.82[AMR][1000 genomes]
rs9365133	0.82[AMR][1000 genomes]
rs9457841	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758089	chr6:160372244-161234665	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2759484	chr6:160372244-161234665	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv35098	chr6:160422589-161070870	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	esv2757197	chr6:160432331-161070870	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv818463	chr6:160435569-161025547	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:160526200-160548600	Weak transcription	K562	blood
2	chr6:160526800-160545000	Weak transcription	HMEC	breast
3	chr6:160527000-160545000	Weak transcription	NHDF-Ad	bronchial
4	chr6:160527400-160549200	Weak transcription	Colonic Mucosa	Colon
5	chr6:160527400-160550000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:160529400-160548000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:160529400-160559200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:160530400-160548600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr6:160530800-160553400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:160531400-160545400	Weak transcription	NHLF	lung
11	chr6:160533400-160552800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:160534400-160544200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:160538800-160557600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr6:160539000-160544200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:160539000-160546800	Weak transcription	NHEK	skin
16	chr6:160539000-160553000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:160539200-160545800	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr6:160539400-160544800	Weak transcription	Thymus	Thymus
19	chr6:160539400-160545400	Weak transcription	Duodenum Mucosa	Duodenum
20	chr6:160539400-160546200	Weak transcription	Brain Cingulate Gyrus	brain
21	chr6:160539400-160554200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:160539400-160554800	Weak transcription	Spleen	Spleen
23	chr6:160539400-160558000	Weak transcription	Gastric	stomach
24	chr6:160539400-160559400	Weak transcription	Brain Angular Gyrus	brain
25	chr6:160539400-160559400	Weak transcription	HSMMtube	muscle
26	chr6:160539400-160559600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:160539400-160580400	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr6:160539600-160553400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:160539600-160574600	Weak transcription	Adipose Nuclei	Adipose
30	chr6:160539800-160544800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr6:160539800-160549000	Weak transcription	Primary T cells from cord blood	blood
32	chr6:160539800-160553400	Weak transcription	Ovary	ovary
33	chr6:160540000-160545600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr6:160540200-160576200	Weak transcription	Right Ventricle	heart
35	chr6:160540400-160568800	Weak transcription	Esophagus	oesophagus
36	chr6:160541400-160544000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:160541400-160545800	Weak transcription	Aorta	Aorta
38	chr6:160541600-160553200	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr6:160542000-160544800	Weak transcription	Fetal Intestine Large	intestine
40	chr6:160542400-160544800	Weak transcription	HepG2	liver
41	chr6:160542600-160544600	Strong transcription	Fetal Intestine Small	intestine
42	chr6:160542600-160545600	Active TSS	Liver	Liver
43	chr6:160542600-160546000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:160542800-160543800	Genic enhancers	Fetal Muscle Trunk	muscle
45	chr6:160542800-160543800	Strong transcription	Fetal Stomach	stomach
46	chr6:160542800-160544200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr6:160543000-160544400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr6:160543200-160545200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr6:160543200-160561400	Weak transcription	Right Atrium	heart
50	chr6:160543400-160545000	Strong transcription	Fetal Muscle Leg	muscle

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