Variant report

Variant	rs4709703
Chromosome Location	chr6:163745415-163745416
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:163700094..163703003-chr6:163745162..163748023,2	MCF-7	breast:
2	chr6:163743943..163749523-chr6:163832972..163838830,12	MCF-7	breast:
3	chr6:163732876..163734590-chr6:163745076..163747152,2	MCF-7	breast:
4	chr6:163742095..163749894-chr6:163832230..163837162,13	MCF-7	breast:
5	chr6:163743568..163746151-chr6:163758711..163760918,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AL078585.1-11	chr6:163745412-163745494	NONHSAT115954
2	lnc-AL078585.1-11	chr6:163745402-163745505	NONHSAT115955

No data

Variant related genes	Relation type
ENSG00000270419	Chromatin interaction
ENSG00000112531	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10945892	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12661640	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12662804	0.88[ASN][1000 genomes]
rs12664344	0.88[ASN][1000 genomes]
rs12665161	0.87[ASN][1000 genomes]
rs35561591	0.90[ASN][1000 genomes]
rs4709702	0.99[ASN][1000 genomes]
rs56654356	0.84[ASN][1000 genomes]
rs62428053	0.88[ASN][1000 genomes]
rs62428054	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv605188	chr6:163697439-163772096	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163732000-163749600	Weak transcription	Spleen	Spleen
2	chr6:163736200-163745800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:163740000-163745600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:163740200-163746000	Weak transcription	Psoas Muscle	Psoas
5	chr6:163740200-163746200	Weak transcription	Lung	lung
6	chr6:163741400-163746600	Enhancers	Adipose Nuclei	Adipose
7	chr6:163742800-163746200	Weak transcription	Ovary	ovary
8	chr6:163743400-163748600	Weak transcription	Left Ventricle	heart
9	chr6:163743400-163749600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:163743600-163745600	Weak transcription	Fetal Heart	heart
11	chr6:163744200-163751000	Weak transcription	Right Atrium	heart
12	chr6:163744400-163746000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:163744400-163746600	Enhancers	Fetal Muscle Leg	muscle
14	chr6:163744400-163746600	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr6:163744400-163747200	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr6:163744400-163747400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:163744400-163747600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:163744400-163747600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr6:163744600-163745800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:163744600-163746600	Enhancers	Placenta	Placenta
21	chr6:163744600-163746800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:163744800-163746000	Enhancers	HSMMtube	muscle
23	chr6:163744800-163746800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr6:163744800-163747000	Weak transcription	Pancreas	Pancrea
25	chr6:163745000-163745600	Active TSS	Brain Cingulate Gyrus	brain
26	chr6:163745000-163745800	Weak transcription	Brain Angular Gyrus	brain
27	chr6:163745000-163745800	Enhancers	Osteobl	bone
28	chr6:163745000-163746000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr6:163745000-163746000	Weak transcription	Fetal Muscle Trunk	muscle
30	chr6:163745000-163746800	Enhancers	NHDF-Ad	bronchial
31	chr6:163745000-163753200	Weak transcription	Right Ventricle	heart
32	chr6:163745200-163745600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:163745200-163746600	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr6:163745200-163767000	Enhancers	Brain Inferior Temporal Lobe	brain
35	chr6:163745400-163745600	Flanking Active TSS	Brain Hippocampus Middle	brain
36	chr6:163745400-163745600	Flanking Active TSS	Brain Substantia Nigra	brain
37	chr6:163745400-163745800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr6:163745400-163745800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr6:163745400-163746000	Enhancers	Muscle Satellite Cultured Cells	--
40	chr6:163745400-163746000	Enhancers	HepG2	liver
41	chr6:163745400-163746000	Enhancers	HSMM	muscle
42	chr6:163745400-163746200	Flanking Active TSS	Brain Anterior Caudate	brain
43	chr6:163745400-163746400	Active TSS	A549	lung
44	chr6:163745400-163746800	Enhancers	Liver	Liver

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