Variant report

Variant	rs4711211
Chromosome Location	chr6:30162809-30162810
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:30162756-30165447	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30161796..30164276-chr6:30165247..30166786,2	MCF-7	breast:

Variant related genes	Relation type
TRIM26	TF binding region

Extended variants
information (count: 68 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1042338	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1076229	0.81[EUR][1000 genomes]
rs13194768	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1419671	0.81[EUR][1000 genomes]
rs1419673	0.81[EUR][1000 genomes]
rs1573297	0.81[EUR][1000 genomes]
rs1573299	0.81[EUR][1000 genomes]
rs17194607	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2239530	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2517606	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2517616	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2517655	0.83[EUR][1000 genomes]
rs2844775	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2857435	0.82[EUR][1000 genomes]
rs2857438	0.82[EUR][1000 genomes]
rs2857439	0.82[EUR][1000 genomes]
rs2857440	0.82[EUR][1000 genomes]
rs3778622	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3888580	0.81[EUR][1000 genomes]
rs4392759	0.81[EUR][1000 genomes]
rs4713293	0.81[EUR][1000 genomes]
rs4959012	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4959044	0.81[EUR][1000 genomes]
rs757259	0.81[EUR][1000 genomes]
rs757261	0.82[EUR][1000 genomes]
rs757262	0.81[EUR][1000 genomes]
rs7843	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9261442	0.81[EUR][1000 genomes]
rs9261444	0.82[EUR][1000 genomes]
rs9261445	0.81[EUR][1000 genomes]
rs9261446	0.81[EUR][1000 genomes]
rs9261448	0.82[EUR][1000 genomes]
rs9261454	0.81[EUR][1000 genomes]
rs9261456	0.81[EUR][1000 genomes]
rs9261457	0.81[EUR][1000 genomes]
rs9261458	0.81[EUR][1000 genomes]
rs9261462	0.81[EUR][1000 genomes]
rs9261463	0.81[EUR][1000 genomes]
rs9261465	0.81[EUR][1000 genomes]
rs9261466	0.81[EUR][1000 genomes]
rs9261467	0.81[EUR][1000 genomes]
rs9261468	0.81[EUR][1000 genomes]
rs9261470	0.81[EUR][1000 genomes]
rs9261471	0.82[EUR][1000 genomes]
rs9261472	0.82[EUR][1000 genomes]
rs9261473	0.82[EUR][1000 genomes]
rs9261479	0.82[EUR][1000 genomes]
rs9261480	0.82[EUR][1000 genomes]
rs9261482	0.82[EUR][1000 genomes]
rs9261485	0.82[EUR][1000 genomes]
rs9261486	0.82[EUR][1000 genomes]
rs9261488	0.82[EUR][1000 genomes]
rs9261489	0.82[EUR][1000 genomes]
rs9261495	0.83[EUR][1000 genomes]
rs9261499	0.82[EUR][1000 genomes]
rs9261500	0.82[EUR][1000 genomes]
rs9261505	0.81[EUR][1000 genomes]
rs9261511	0.82[EUR][1000 genomes]
rs9261514	0.81[EUR][1000 genomes]
rs9261517	0.82[EUR][1000 genomes]
rs9261521	0.81[EUR][1000 genomes]
rs9261522	0.81[EUR][1000 genomes]
rs9261524	0.82[EUR][1000 genomes]
rs9261535	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs929156	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9357094	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9380159	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs957765	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs4711211	BTN2A1	cis	cerebellum	SCAN
rs4711211	ZKSCAN3	cis	cerebellum	SCAN
rs4711211	HLA-A	Cis_1M	lymphoblastoid	RTeQTL
rs4711211	HIST1H2BN	cis	parietal	SCAN
rs4711211	HIST1H2AM	cis	parietal	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30145000-30173800	Weak transcription	Right Atrium	heart
2	chr6:30148000-30173000	Weak transcription	Fetal Heart	heart
3	chr6:30150200-30163400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr6:30150600-30179200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr6:30151800-30170400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:30152000-30166400	Strong transcription	Liver	Liver
7	chr6:30152000-30168000	Strong transcription	Fetal Intestine Large	intestine
8	chr6:30152000-30168200	Strong transcription	Primary T cells fromperipheralblood	blood
9	chr6:30152000-30168200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:30152000-30168200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:30152000-30169000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:30152000-30170600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:30152000-30172400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:30152200-30167800	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr6:30152200-30167800	Strong transcription	Primary B cells from peripheral blood	blood
16	chr6:30152200-30168000	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr6:30152200-30168200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr6:30152200-30168200	Strong transcription	Duodenum Mucosa	Duodenum
19	chr6:30152200-30168600	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr6:30152200-30169000	Strong transcription	Duodenum Smooth Muscle	Duodenum
21	chr6:30152400-30167200	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr6:30152400-30168800	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr6:30152400-30169000	Strong transcription	Adipose Nuclei	Adipose
24	chr6:30152600-30166000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr6:30152800-30163000	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr6:30153200-30169800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr6:30156600-30164600	Weak transcription	HSMM	muscle
28	chr6:30156800-30174600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:30157000-30171800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr6:30157200-30164600	Weak transcription	Primary hematopoietic stem cells	blood
31	chr6:30157600-30166600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr6:30158200-30163000	Weak transcription	Brain Cingulate Gyrus	brain
33	chr6:30158200-30163200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr6:30158200-30164200	Weak transcription	HUVEC	blood vessel
35	chr6:30158200-30173600	Weak transcription	Psoas Muscle	Psoas
36	chr6:30158400-30163200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr6:30158400-30179600	Weak transcription	Fetal Brain Male	brain
38	chr6:30158600-30164600	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr6:30158800-30164200	Weak transcription	HMEC	breast
40	chr6:30158800-30164800	Weak transcription	Stomach Mucosa	stomach
41	chr6:30158800-30165400	Weak transcription	Fetal Kidney	kidney
42	chr6:30159000-30163000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:30159000-30163000	Weak transcription	HSMMtube	muscle
44	chr6:30159000-30164200	Weak transcription	Brain Angular Gyrus	brain
45	chr6:30159000-30164400	Weak transcription	Hela-S3	cervix
46	chr6:30159000-30166800	Weak transcription	A549	lung
47	chr6:30159400-30163800	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr6:30159600-30163000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr6:30159800-30163200	Weak transcription	Primary B cells from cord blood	blood
50	chr6:30159800-30164600	Weak transcription	Osteobl	bone

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