Variant report

Variant	rs7843
Chromosome Location	chr6:30152367-30152368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30146840..30149453-chr6:30151238..30153459,2	K562	blood:

Extended variants
information (count: 122 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs1042338	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1076229	0.89[EUR][1000 genomes]
rs13194768	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1419671	0.89[EUR][1000 genomes]
rs1419672	0.82[EUR][1000 genomes]
rs1419673	0.89[EUR][1000 genomes]
rs1541324	0.81[EUR][1000 genomes]
rs1573297	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1573298	0.81[EUR][1000 genomes]
rs1573299	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17194607	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2239530	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2285796	0.84[EUR][1000 genomes]
rs2508030	0.84[EUR][1000 genomes]
rs2508031	0.82[EUR][1000 genomes]
rs2517606	0.88[ASN][1000 genomes]
rs2517616	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2517655	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2844775	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2857433	0.84[EUR][1000 genomes]
rs2857435	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2857438	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2857439	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2857440	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3778622	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3815079	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3815080	0.81[EUR][1000 genomes]
rs3815082	0.81[EUR][1000 genomes]
rs3815084	0.81[EUR][1000 genomes]
rs3815085	0.81[EUR][1000 genomes]
rs3815086	0.81[EUR][1000 genomes]
rs3888580	0.89[EUR][1000 genomes]
rs4392759	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4711211	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4713293	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4959011	0.81[EUR][1000 genomes]
rs4959012	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4959044	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs757259	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs757261	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs757262	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs757263	0.82[EUR][1000 genomes]
rs757264	0.81[EUR][1000 genomes]
rs9261433	0.86[EUR][1000 genomes]
rs9261440	0.83[EUR][1000 genomes]
rs9261442	0.89[EUR][1000 genomes]
rs9261443	0.82[EUR][1000 genomes]
rs9261444	0.90[EUR][1000 genomes]
rs9261445	0.89[EUR][1000 genomes]
rs9261446	0.89[EUR][1000 genomes]
rs9261448	0.90[EUR][1000 genomes]
rs9261450	0.82[EUR][1000 genomes]
rs9261451	0.82[EUR][1000 genomes]
rs9261453	0.82[EUR][1000 genomes]
rs9261454	0.89[EUR][1000 genomes]
rs9261455	0.82[EUR][1000 genomes]
rs9261456	0.89[EUR][1000 genomes]
rs9261457	0.89[EUR][1000 genomes]
rs9261458	0.89[EUR][1000 genomes]
rs9261459	0.87[EUR][1000 genomes]
rs9261461	0.80[EUR][1000 genomes]
rs9261462	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9261463	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9261465	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9261466	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9261467	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9261468	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9261470	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9261471	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9261472	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9261473	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9261479	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9261480	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9261481	0.81[EUR][1000 genomes]
rs9261482	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9261483	0.81[EUR][1000 genomes]
rs9261485	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9261486	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9261488	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9261489	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9261490	0.82[EUR][1000 genomes]
rs9261491	0.82[EUR][1000 genomes]
rs9261492	0.82[EUR][1000 genomes]
rs9261495	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9261496	0.82[EUR][1000 genomes]
rs9261497	0.82[EUR][1000 genomes]
rs9261498	0.81[EUR][1000 genomes]
rs9261499	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9261500	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9261502	0.81[EUR][1000 genomes]
rs9261503	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9261504	0.81[EUR][1000 genomes]
rs9261505	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9261507	0.81[EUR][1000 genomes]
rs9261508	0.81[EUR][1000 genomes]
rs9261509	0.81[EUR][1000 genomes]
rs9261511	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9261512	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9261513	0.81[EUR][1000 genomes]
rs9261514	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9261516	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9261517	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9261518	0.82[EUR][1000 genomes]
rs9261519	0.82[EUR][1000 genomes]
rs9261521	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9261522	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9261523	0.82[EUR][1000 genomes]
rs9261524	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9261525	0.82[EUR][1000 genomes]
rs9261526	0.84[EUR][1000 genomes]
rs9261527	0.82[EUR][1000 genomes]
rs9261528	0.82[EUR][1000 genomes]
rs9261529	0.83[EUR][1000 genomes]
rs9261530	0.84[EUR][1000 genomes]
rs9261531	0.84[EUR][1000 genomes]
rs9261532	0.84[EUR][1000 genomes]
rs9261533	0.86[EUR][1000 genomes]
rs9261535	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs929156	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9357094	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9380159	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs957765	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs7843	BTN2A1	cis	cerebellum	SCAN
rs7843	HLA-A	Cis_1M	lymphoblastoid	RTeQTL
rs7843	HIST1H2BN	cis	parietal	SCAN
rs7843	HIST1H2AM	cis	parietal	SCAN
rs7843	ZKSCAN3	cis	cerebellum	SCAN

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30145000-30173800	Weak transcription	Right Atrium	heart
2	chr6:30148000-30152600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr6:30148000-30155000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr6:30148000-30173000	Weak transcription	Fetal Heart	heart
5	chr6:30148200-30152400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:30148200-30154800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr6:30148400-30154000	Weak transcription	HUVEC	blood vessel
8	chr6:30149000-30152400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr6:30149000-30152800	Weak transcription	Fetal Brain Male	brain
10	chr6:30149000-30156400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr6:30149200-30152400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:30149200-30152600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:30149200-30152600	Weak transcription	HMEC	breast
14	chr6:30149200-30157400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:30149400-30152400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr6:30149400-30152400	Weak transcription	Esophagus	oesophagus
17	chr6:30149400-30152600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:30149400-30152600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:30149400-30152600	Weak transcription	Left Ventricle	heart
20	chr6:30149400-30152600	Weak transcription	Ovary	ovary
21	chr6:30149400-30152800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr6:30149400-30153200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr6:30149400-30153400	Weak transcription	A549	lung
24	chr6:30149600-30152400	Weak transcription	GM12878-XiMat	blood
25	chr6:30149600-30152600	Weak transcription	Dnd41	blood
26	chr6:30149600-30153000	Weak transcription	Osteobl	bone
27	chr6:30149600-30155000	Weak transcription	NHEK	skin
28	chr6:30149800-30152400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:30149800-30152400	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr6:30149800-30152400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:30149800-30152400	Weak transcription	Lung	lung
32	chr6:30149800-30152400	Weak transcription	Psoas Muscle	Psoas
33	chr6:30149800-30152400	Weak transcription	HSMMtube	muscle
34	chr6:30149800-30152600	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr6:30149800-30152600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr6:30149800-30153400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr6:30149800-30153400	Weak transcription	Pancreas	Pancrea
38	chr6:30150000-30152400	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr6:30150000-30152400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr6:30150000-30152400	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr6:30150000-30152400	Weak transcription	Spleen	Spleen
42	chr6:30150000-30152600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:30150000-30152600	Weak transcription	Placenta	Placenta
44	chr6:30150000-30152800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr6:30150000-30153000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr6:30150000-30155000	Weak transcription	HSMM	muscle
47	chr6:30150000-30156400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:30150200-30152400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr6:30150200-30152400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr6:30150200-30152400	Weak transcription	Aorta	Aorta

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