Variant report

Variant	rs9261532
Chromosome Location	chr6:30120945-30120946
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:30119391..30121135-chr6:30321285..30322810,2	K562	blood:
2	chr6:30116433..30118357-chr6:30119200..30121836,2	MCF-7	breast:
3	chr6:30092394..30094578-chr6:30120446..30121954,2	MCF-7	breast:
4	chr6:30119883..30121941-chr6:30128397..30130915,2	MCF-7	breast:
5	chr6:30027349..30029645-chr6:30119880..30121470,2	MCF-7	breast:
6	chr6:30120236..30122567-chr6:30123683..30125574,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000066379	Chromatin interaction
ENSG00000204613	Chromatin interaction
ENSG00000204623	Chromatin interaction

Extended variants
information (count: 131 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:131)

rs_ID	r²[population]
rs1042338	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1076229	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10947053	0.86[ASN][1000 genomes]
rs13194768	0.84[EUR][1000 genomes]
rs1419671	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1419672	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1419673	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1541324	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1573297	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1573298	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1573299	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2239530	0.84[EUR][1000 genomes]
rs2284163	0.86[ASN][1000 genomes]
rs2285795	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2285796	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2508030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2508031	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2517653	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2517655	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28400887	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2857433	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2857435	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2857436	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2857438	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2857439	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2857440	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2857458	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3132124	0.82[ASN][1000 genomes]
rs3815079	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3815080	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3815082	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3815084	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3815085	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3815086	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3888580	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4392759	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4713293	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4959011	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4959012	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4959041	0.86[ASN][1000 genomes]
rs4959044	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs757259	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs757261	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs757262	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs757263	0.80[AFR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs757264	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7843	0.84[EUR][1000 genomes]
rs9261424	0.86[ASN][1000 genomes]
rs9261431	0.86[ASN][1000 genomes]
rs9261433	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9261438	0.86[ASN][1000 genomes]
rs9261439	0.86[ASN][1000 genomes]
rs9261440	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9261442	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9261443	0.80[AFR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9261444	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9261445	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9261446	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9261448	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9261449	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9261450	0.80[AFR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9261451	0.80[AFR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9261453	0.90[AFR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261454	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9261455	0.90[AFR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261456	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9261457	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9261458	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9261459	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9261461	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9261462	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9261463	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9261465	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9261466	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9261467	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9261468	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9261470	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9261471	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9261472	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9261473	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9261479	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9261480	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9261481	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9261482	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9261483	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9261484	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9261485	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9261486	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9261488	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9261489	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9261490	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9261491	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9261492	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9261493	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261495	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9261496	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9261497	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9261498	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9261499	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9261500	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9261501	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9261502	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9261503	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9261504	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9261505	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9261507	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9261508	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9261509	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9261511	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9261512	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261513	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9261514	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261516	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9261517	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9261518	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9261519	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9261521	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9261522	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9261523	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9261524	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9261525	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9261526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9261527	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9261528	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9261529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9261530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9261531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9261533	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9261535	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs929156	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs957765	0.84[EUR][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs9261532	HLA-A	Cis_1M	lymphoblastoid	RTeQTL
rs9261532	HIST1H2BN	cis	parietal	SCAN
rs9261532	HIST1H2AI	cis	parietal	SCAN
rs9261532	BTN2A1	cis	cerebellum	SCAN
rs9261532	HIST1H2AM	cis	parietal	SCAN
rs9261532	ZKSCAN3	cis	cerebellum	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30116000-30121800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:30117200-30122000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:30117800-30121600	Enhancers	Primary hematopoietic stem cells	blood
4	chr6:30118400-30122200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:30118600-30121400	Enhancers	Fetal Intestine Small	intestine
6	chr6:30118600-30125000	Enhancers	Fetal Intestine Large	intestine
7	chr6:30118800-30121800	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr6:30119200-30121000	Weak transcription	Placenta	Placenta
9	chr6:30119200-30122400	Weak transcription	HSMM	muscle
10	chr6:30119400-30121800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:30119600-30121000	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr6:30119600-30122000	Weak transcription	Osteobl	bone
13	chr6:30119600-30122400	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr6:30119600-30124000	Weak transcription	Right Atrium	heart
15	chr6:30119800-30121000	Weak transcription	Small Intestine	intestine
16	chr6:30119800-30121000	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr6:30119800-30121800	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr6:30119800-30122000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:30119800-30122400	Enhancers	HepG2	liver
20	chr6:30120000-30121800	Weak transcription	Colonic Mucosa	Colon
21	chr6:30120200-30122200	Enhancers	Duodenum Mucosa	Duodenum
22	chr6:30120600-30123800	Weak transcription	K562	blood
23	chr6:30120800-30121000	Enhancers	Lung	lung
24	chr6:30120800-30121200	Enhancers	Sigmoid Colon	Sigmoid Colon

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