Variant report
Variant | rs9261438 |
---|---|
Chromosome Location | chr6:30089280-30089281 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr6:30029228..30033267-chr6:30087715..30091660,3 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000204623 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs1076229 | 0.97[ASN][1000 genomes] |
rs10947053 | 0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1419671 | 0.97[ASN][1000 genomes] |
rs1419672 | 0.91[ASN][1000 genomes] |
rs1419673 | 0.99[ASN][1000 genomes] |
rs1541324 | 0.87[ASN][1000 genomes] |
rs1573297 | 0.92[ASN][1000 genomes] |
rs1573298 | 0.82[ASN][1000 genomes] |
rs1573299 | 0.92[ASN][1000 genomes] |
rs2284163 | 0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2285796 | 0.86[ASN][1000 genomes] |
rs2508030 | 0.86[ASN][1000 genomes] |
rs2508031 | 0.84[ASN][1000 genomes] |
rs2517653 | 0.83[ASN][1000 genomes] |
rs2517655 | 0.89[ASN][1000 genomes] |
rs28400887 | 0.81[AFR][1000 genomes];0.93[ASN][1000 genomes] |
rs2857433 | 0.86[ASN][1000 genomes] |
rs2857435 | 0.88[ASN][1000 genomes] |
rs2857436 | 0.82[ASN][1000 genomes] |
rs2857438 | 0.88[ASN][1000 genomes] |
rs2857439 | 0.92[ASN][1000 genomes] |
rs2857440 | 0.88[ASN][1000 genomes] |
rs2857458 | 0.82[ASN][1000 genomes] |
rs3815079 | 0.90[ASN][1000 genomes] |
rs3815080 | 0.82[ASN][1000 genomes] |
rs3815082 | 0.87[ASN][1000 genomes] |
rs3815084 | 0.87[ASN][1000 genomes] |
rs3815085 | 0.87[ASN][1000 genomes] |
rs3815086 | 0.87[ASN][1000 genomes] |
rs3888580 | 0.97[ASN][1000 genomes] |
rs4392759 | 0.92[ASN][1000 genomes] |
rs4713293 | 0.85[ASN][1000 genomes] |
rs4959011 | 0.82[ASN][1000 genomes] |
rs4959012 | 0.92[ASN][1000 genomes] |
rs4959041 | 0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4959044 | 0.92[ASN][1000 genomes] |
rs757259 | 0.92[ASN][1000 genomes] |
rs757261 | 0.92[ASN][1000 genomes] |
rs757262 | 0.92[ASN][1000 genomes] |
rs757263 | 0.94[ASN][1000 genomes] |
rs757264 | 0.94[ASN][1000 genomes] |
rs9261424 | 0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9261431 | 0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9261433 | 0.99[ASN][1000 genomes] |
rs9261439 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9261440 | 0.96[ASN][1000 genomes] |
rs9261442 | 0.99[ASN][1000 genomes] |
rs9261443 | 0.91[ASN][1000 genomes] |
rs9261444 | 0.99[ASN][1000 genomes] |
rs9261445 | 0.99[ASN][1000 genomes] |
rs9261446 | 0.99[ASN][1000 genomes] |
rs9261448 | 0.95[ASN][1000 genomes] |
rs9261449 | 0.97[ASN][1000 genomes] |
rs9261450 | 0.94[ASN][1000 genomes] |
rs9261451 | 0.94[ASN][1000 genomes] |
rs9261453 | 0.93[ASN][1000 genomes] |
rs9261454 | 0.96[ASN][1000 genomes] |
rs9261455 | 0.93[ASN][1000 genomes] |
rs9261456 | 0.96[ASN][1000 genomes] |
rs9261457 | 0.96[ASN][1000 genomes] |
rs9261458 | 0.96[ASN][1000 genomes] |
rs9261459 | 0.96[ASN][1000 genomes] |
rs9261461 | 0.82[ASN][1000 genomes] |
rs9261462 | 0.92[ASN][1000 genomes] |
rs9261463 | 0.92[ASN][1000 genomes] |
rs9261465 | 0.92[ASN][1000 genomes] |
rs9261466 | 0.88[ASN][1000 genomes] |
rs9261467 | 0.92[ASN][1000 genomes] |
rs9261468 | 0.92[ASN][1000 genomes] |
rs9261470 | 0.88[ASN][1000 genomes] |
rs9261471 | 0.92[ASN][1000 genomes] |
rs9261472 | 0.88[ASN][1000 genomes] |
rs9261473 | 0.92[ASN][1000 genomes] |
rs9261479 | 0.86[ASN][1000 genomes] |
rs9261480 | 0.86[ASN][1000 genomes] |
rs9261481 | 0.82[ASN][1000 genomes] |
rs9261482 | 0.88[ASN][1000 genomes] |
rs9261483 | 0.82[ASN][1000 genomes] |
rs9261484 | 0.82[ASN][1000 genomes] |
rs9261485 | 0.88[ASN][1000 genomes] |
rs9261486 | 0.88[ASN][1000 genomes] |
rs9261488 | 0.92[ASN][1000 genomes] |
rs9261489 | 0.92[ASN][1000 genomes] |
rs9261490 | 0.87[ASN][1000 genomes] |
rs9261491 | 0.87[ASN][1000 genomes] |
rs9261492 | 0.87[ASN][1000 genomes] |
rs9261493 | 0.84[ASN][1000 genomes] |
rs9261495 | 0.92[ASN][1000 genomes] |
rs9261496 | 0.87[ASN][1000 genomes] |
rs9261497 | 0.87[ASN][1000 genomes] |
rs9261498 | 0.82[ASN][1000 genomes] |
rs9261499 | 0.92[ASN][1000 genomes] |
rs9261500 | 0.92[ASN][1000 genomes] |
rs9261501 | 0.87[ASN][1000 genomes] |
rs9261502 | 0.87[ASN][1000 genomes] |
rs9261503 | 0.92[ASN][1000 genomes] |
rs9261504 | 0.88[ASN][1000 genomes] |
rs9261505 | 0.92[ASN][1000 genomes] |
rs9261507 | 0.87[ASN][1000 genomes] |
rs9261508 | 0.87[ASN][1000 genomes] |
rs9261509 | 0.87[ASN][1000 genomes] |
rs9261511 | 0.92[ASN][1000 genomes] |
rs9261512 | 0.89[ASN][1000 genomes] |
rs9261513 | 0.82[ASN][1000 genomes] |
rs9261514 | 0.91[ASN][1000 genomes] |
rs9261516 | 0.89[ASN][1000 genomes] |
rs9261517 | 0.92[ASN][1000 genomes] |
rs9261518 | 0.87[ASN][1000 genomes] |
rs9261519 | 0.87[ASN][1000 genomes] |
rs9261521 | 0.89[ASN][1000 genomes] |
rs9261522 | 0.89[ASN][1000 genomes] |
rs9261523 | 0.87[ASN][1000 genomes] |
rs9261524 | 0.92[ASN][1000 genomes] |
rs9261525 | 0.87[ASN][1000 genomes] |
rs9261526 | 0.86[ASN][1000 genomes] |
rs9261527 | 0.84[ASN][1000 genomes] |
rs9261528 | 0.84[ASN][1000 genomes] |
rs9261529 | 0.86[ASN][1000 genomes] |
rs9261530 | 0.86[ASN][1000 genomes] |
rs9261531 | 0.86[ASN][1000 genomes] |
rs9261532 | 0.86[ASN][1000 genomes] |
rs9261533 | 0.86[ASN][1000 genomes] |
rs9261535 | 0.84[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv601476 | chr6:30085838-30091311 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
SNP | Gene | Cis/trans | Tissue | Source |
---|---|---|---|---|
rs9261438 | HCG4P6 | Cis_1M | lymphoblastoid | RTeQTL |
rs9261438 | ZKSCAN3 | cis | cerebellum | SCAN |
rs9261438 | HLA-A | Cis_1M | lymphoblastoid | RTeQTL |
rs9261438 | HIST1H2AI | cis | parietal | SCAN |
rs9261438 | HIST1H2AH | cis | cerebellum | SCAN |
rs9261438 | HIST1H2AM | cis | parietal | SCAN |
rs9261438 | HLA-H | cis | lymphoblastoid | seeQTL |
rs9261438 | BTN2A1 | cis | cerebellum | SCAN |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:30082000-30089400 | Weak transcription | Duodenum Mucosa | Duodenum |
2 | chr6:30082400-30091000 | Weak transcription | HepG2 | liver |
3 | chr6:30086200-30092600 | Enhancers | Fetal Intestine Small | intestine |
4 | chr6:30087400-30090600 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
5 | chr6:30087600-30089400 | Weak transcription | Stomach Mucosa | stomach |
6 | chr6:30087600-30089600 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
7 | chr6:30088000-30089400 | Weak transcription | Rectal Mucosa Donor 31 | rectum |
8 | chr6:30088000-30089400 | Weak transcription | Sigmoid Colon | Sigmoid Colon |
9 | chr6:30088000-30089800 | Weak transcription | NHDF-Ad | bronchial |
10 | chr6:30088200-30089400 | Weak transcription | Rectal Mucosa Donor 29 | rectum |
11 | chr6:30089000-30092600 | Enhancers | Fetal Intestine Large | intestine |
12 | chr6:30089200-30089800 | Bivalent Enhancer | Fetal Adrenal Gland | Adrenal Gland |
13 | chr6:30089200-30090400 | Enhancers | Colonic Mucosa | Colon |
14 | chr6:30089200-30092400 | Enhancers | Hela-S3 | cervix |