Variant report

Variant	rs757264
Chromosome Location	chr6:30098248-30098249
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:30096297..30098577-chr6:30292705..30294693,2	MCF-7	breast:
2	chr6:30033618..30036318-chr6:30097659..30102068,3	MCF-7	breast:
3	chr6:30044585..30046967-chr6:30097709..30100269,2	MCF-7	breast:
4	chr6:30070867..30073416-chr6:30097029..30099845,2	K562	blood:
5	chr6:30070301..30072986-chr6:30097734..30100221,43	MCF-7	breast:
6	chr6:30093045..30094849-chr6:30097589..30099576,2	MCF-7	breast:
7	chr6:30067195..30070112-chr6:30098151..30100617,2	MCF-7	breast:
8	chr6:30070791..30073416-chr6:30095644..30098529,2	K562	blood:
9	chr6:30097580..30101195-chr6:30103058..30105479,3	MCF-7	breast:
10	chr6:30091019..30094481-chr6:30095201..30099363,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000270604	Chromatin interaction
ENSG00000204616	Chromatin interaction
ENSG00000204599	Chromatin interaction
ENSG00000231226	Chromatin interaction
ENSG00000204614	Chromatin interaction
ENSG00000231074	Chromatin interaction
ENSG00000204619	Chromatin interaction

Extended variants
information (count: 130 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:130)

rs_ID	r²[population]
rs1042338	0.86[EUR][1000 genomes]
rs1076229	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10947053	0.94[ASN][1000 genomes]
rs13194768	0.81[EUR][1000 genomes]
rs1419671	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1419672	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1419673	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1541324	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1573297	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1573298	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1573299	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2239530	0.81[EUR][1000 genomes]
rs2284163	0.94[ASN][1000 genomes]
rs2285795	0.91[EUR][1000 genomes]
rs2285796	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2508030	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2508031	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2517653	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2517655	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28400887	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2857433	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2857435	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2857436	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2857438	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2857439	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2857440	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2857458	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3815079	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3815080	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3815082	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3815084	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3815085	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3815086	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3888580	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4392759	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4713293	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4959011	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4959012	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4959041	0.94[ASN][1000 genomes]
rs4959044	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs757259	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs757261	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs757262	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs757263	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7843	0.81[EUR][1000 genomes]
rs9261424	0.94[ASN][1000 genomes]
rs9261431	0.94[ASN][1000 genomes]
rs9261433	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9261438	0.94[ASN][1000 genomes]
rs9261439	0.94[ASN][1000 genomes]
rs9261440	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9261442	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9261443	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9261444	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9261445	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9261446	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9261448	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9261449	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9261450	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9261451	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9261453	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9261454	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9261455	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9261456	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9261457	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9261458	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9261459	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9261461	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9261462	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261463	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261465	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261466	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9261467	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261468	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261470	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9261471	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261472	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9261473	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261479	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9261480	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9261481	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9261482	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9261483	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9261484	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9261485	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9261486	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9261488	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261489	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261490	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261491	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261492	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261493	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9261495	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261496	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261497	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261498	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9261499	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261500	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261501	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261502	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261503	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261504	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9261505	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261507	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261508	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261509	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261511	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261512	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9261513	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9261514	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9261516	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9261517	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261518	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261519	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261521	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9261522	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9261523	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261524	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261525	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9261526	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9261527	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9261528	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9261529	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9261530	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9261531	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9261532	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9261533	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9261535	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs929156	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs957765	0.81[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs757264	HLA-A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30096200-30100400	Enhancers	Fetal Intestine Large	intestine
2	chr6:30096600-30098400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:30097000-30098600	Enhancers	HepG2	liver
4	chr6:30097000-30100400	Enhancers	Fetal Intestine Small	intestine
5	chr6:30097200-30098600	Enhancers	A549	lung
6	chr6:30097200-30099000	Flanking Active TSS	Hela-S3	cervix
7	chr6:30097200-30099200	Enhancers	Duodenum Mucosa	Duodenum
8	chr6:30097200-30099200	Enhancers	Stomach Mucosa	stomach
9	chr6:30097400-30099000	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
10	chr6:30097600-30098600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:30097600-30098800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:30097600-30099000	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
13	chr6:30097800-30098400	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
14	chr6:30098000-30098400	Bivalent Enhancer	Small Intestine	intestine
15	chr6:30098000-30098800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
16	chr6:30098000-30099000	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
17	chr6:30098200-30098400	Bivalent Enhancer	Colonic Mucosa	Colon
18	chr6:30098200-30098600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:30098200-30098600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:30098200-30098600	Bivalent Enhancer	NHEK	skin
21	chr6:30098200-30098800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
22	chr6:30098200-30098800	Bivalent Enhancer	GM12878-XiMat	blood
23	chr6:30098200-30099000	Bivalent Enhancer	Placenta	Placenta

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