Variant report

Variant	rs2857436
Chromosome Location	chr6:30106070-30106071
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30104961..30107914-chr6:30134215..30135756,2	MCF-7	breast:

Extended variants
information (count: 124 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs1076229	0.85[ASN][1000 genomes]
rs10947053	0.82[ASN][1000 genomes]
rs1419671	0.85[ASN][1000 genomes]
rs1419672	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1419673	0.83[ASN][1000 genomes]
rs1541324	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1573297	0.90[ASN][1000 genomes]
rs1573298	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1573299	0.90[ASN][1000 genomes]
rs2284163	0.82[ASN][1000 genomes]
rs2285796	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2508030	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2508031	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2517653	0.88[ASN][1000 genomes]
rs2517655	0.87[ASN][1000 genomes]
rs28400887	0.82[ASN][1000 genomes]
rs2857433	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2857435	0.94[ASN][1000 genomes]
rs2857438	0.94[ASN][1000 genomes]
rs2857439	0.90[ASN][1000 genomes]
rs2857440	0.94[ASN][1000 genomes]
rs2857458	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3132124	0.82[ASN][1000 genomes]
rs3815079	0.88[ASN][1000 genomes]
rs3815080	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3815082	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3815084	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3815085	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3815086	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3888580	0.85[ASN][1000 genomes]
rs4392759	0.90[ASN][1000 genomes]
rs4713293	0.83[ASN][1000 genomes]
rs4959011	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4959012	0.90[ASN][1000 genomes]
rs4959041	0.82[ASN][1000 genomes]
rs4959044	0.90[ASN][1000 genomes]
rs757259	0.90[ASN][1000 genomes]
rs757261	0.90[ASN][1000 genomes]
rs757262	0.90[ASN][1000 genomes]
rs757263	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs757264	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9261424	0.82[ASN][1000 genomes]
rs9261431	0.82[ASN][1000 genomes]
rs9261433	0.83[ASN][1000 genomes]
rs9261438	0.82[ASN][1000 genomes]
rs9261439	0.82[ASN][1000 genomes]
rs9261440	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9261442	0.83[ASN][1000 genomes]
rs9261443	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9261444	0.83[ASN][1000 genomes]
rs9261445	0.83[ASN][1000 genomes]
rs9261446	0.83[ASN][1000 genomes]
rs9261449	0.85[ASN][1000 genomes]
rs9261450	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9261451	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9261453	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9261454	0.86[ASN][1000 genomes]
rs9261455	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9261456	0.86[ASN][1000 genomes]
rs9261457	0.86[ASN][1000 genomes]
rs9261458	0.86[ASN][1000 genomes]
rs9261459	0.86[ASN][1000 genomes]
rs9261461	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9261462	0.90[ASN][1000 genomes]
rs9261463	0.90[ASN][1000 genomes]
rs9261465	0.90[ASN][1000 genomes]
rs9261466	0.94[ASN][1000 genomes]
rs9261467	0.90[ASN][1000 genomes]
rs9261468	0.90[ASN][1000 genomes]
rs9261470	0.94[ASN][1000 genomes]
rs9261471	0.90[ASN][1000 genomes]
rs9261472	0.94[ASN][1000 genomes]
rs9261473	0.90[ASN][1000 genomes]
rs9261479	0.93[ASN][1000 genomes]
rs9261480	0.93[ASN][1000 genomes]
rs9261481	0.89[ASN][1000 genomes]
rs9261482	0.94[ASN][1000 genomes]
rs9261483	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9261484	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9261485	0.94[ASN][1000 genomes]
rs9261486	0.94[ASN][1000 genomes]
rs9261488	0.90[ASN][1000 genomes]
rs9261489	0.90[ASN][1000 genomes]
rs9261490	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9261491	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9261492	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9261493	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9261495	0.90[ASN][1000 genomes]
rs9261496	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9261497	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9261498	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9261499	0.90[ASN][1000 genomes]
rs9261500	0.90[ASN][1000 genomes]
rs9261501	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9261502	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9261503	0.90[ASN][1000 genomes]
rs9261504	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9261505	0.90[ASN][1000 genomes]
rs9261507	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9261508	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9261509	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9261511	0.90[ASN][1000 genomes]
rs9261512	0.89[ASN][1000 genomes]
rs9261513	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9261514	0.89[ASN][1000 genomes]
rs9261516	0.87[ASN][1000 genomes]
rs9261517	0.90[ASN][1000 genomes]
rs9261518	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9261519	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9261521	0.87[ASN][1000 genomes]
rs9261522	0.87[ASN][1000 genomes]
rs9261523	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9261524	0.90[ASN][1000 genomes]
rs9261525	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9261526	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9261527	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9261528	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9261529	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9261530	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9261531	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9261532	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9261533	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9261535	0.83[ASN][1000 genomes]
rs929156	0.83[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2857436	HLA-A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30103800-30107400	Active TSS	Placenta	Placenta
2	chr6:30104200-30106400	Weak transcription	Stomach Mucosa	stomach
3	chr6:30105000-30106600	Weak transcription	Fetal Intestine Large	intestine
4	chr6:30105200-30106200	Weak transcription	Fetal Intestine Small	intestine
5	chr6:30105400-30106400	Weak transcription	HepG2	liver
6	chr6:30105400-30111600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:30105400-30111800	Weak transcription	Duodenum Mucosa	Duodenum

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