Variant report

Variant	rs3132124
Chromosome Location	chr6:30114402-30114403
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:30110146..30111985-chr6:30113491..30115046,2	K562	blood:
2	chr6:30107127..30109634-chr6:30113826..30115474,2	MCF-7	breast:
3	chr6:30107405..30110939-chr6:30112076..30114448,3	MCF-7	breast:

rs_ID	r²[population]
rs1541324	0.86[ASN][1000 genomes]
rs1573297	0.81[ASN][1000 genomes]
rs1573298	0.82[ASN][1000 genomes]
rs1573299	0.81[ASN][1000 genomes]
rs2285796	0.82[ASN][1000 genomes]
rs2508030	0.82[ASN][1000 genomes]
rs2508031	0.84[ASN][1000 genomes]
rs2517653	0.85[ASN][1000 genomes]
rs2857433	0.82[ASN][1000 genomes]
rs2857436	0.82[ASN][1000 genomes]
rs2857439	0.81[ASN][1000 genomes]
rs2857458	0.82[ASN][1000 genomes]
rs3815079	0.83[ASN][1000 genomes]
rs3815080	0.82[ASN][1000 genomes]
rs3815082	0.86[ASN][1000 genomes]
rs3815084	0.86[ASN][1000 genomes]
rs3815085	0.86[ASN][1000 genomes]
rs3815086	0.86[ASN][1000 genomes]
rs4392759	0.81[ASN][1000 genomes]
rs4959011	0.82[ASN][1000 genomes]
rs4959012	0.81[ASN][1000 genomes]
rs4959044	0.81[ASN][1000 genomes]
rs757259	0.81[ASN][1000 genomes]
rs757261	0.81[ASN][1000 genomes]
rs757262	0.81[ASN][1000 genomes]
rs9261453	0.80[ASN][1000 genomes]
rs9261455	0.80[ASN][1000 genomes]
rs9261461	0.82[ASN][1000 genomes]
rs9261462	0.81[ASN][1000 genomes]
rs9261463	0.81[ASN][1000 genomes]
rs9261465	0.81[ASN][1000 genomes]
rs9261467	0.81[ASN][1000 genomes]
rs9261468	0.81[ASN][1000 genomes]
rs9261471	0.81[ASN][1000 genomes]
rs9261473	0.81[ASN][1000 genomes]
rs9261483	0.82[ASN][1000 genomes]
rs9261484	0.83[ASN][1000 genomes]
rs9261488	0.81[ASN][1000 genomes]
rs9261489	0.81[ASN][1000 genomes]
rs9261490	0.86[ASN][1000 genomes]
rs9261491	0.86[ASN][1000 genomes]
rs9261492	0.86[ASN][1000 genomes]
rs9261493	0.84[ASN][1000 genomes]
rs9261495	0.81[ASN][1000 genomes]
rs9261496	0.86[ASN][1000 genomes]
rs9261497	0.86[ASN][1000 genomes]
rs9261498	0.82[ASN][1000 genomes]
rs9261499	0.81[ASN][1000 genomes]
rs9261500	0.81[ASN][1000 genomes]
rs9261501	0.86[ASN][1000 genomes]
rs9261502	0.86[ASN][1000 genomes]
rs9261503	0.81[ASN][1000 genomes]
rs9261504	0.85[ASN][1000 genomes]
rs9261505	0.81[ASN][1000 genomes]
rs9261507	0.86[ASN][1000 genomes]
rs9261508	0.86[ASN][1000 genomes]
rs9261509	0.86[ASN][1000 genomes]
rs9261511	0.81[ASN][1000 genomes]
rs9261512	0.80[ASN][1000 genomes]
rs9261513	0.82[ASN][1000 genomes]
rs9261514	0.80[ASN][1000 genomes]
rs9261517	0.81[ASN][1000 genomes]
rs9261518	0.86[ASN][1000 genomes]
rs9261519	0.86[ASN][1000 genomes]
rs9261523	0.86[ASN][1000 genomes]
rs9261524	0.81[ASN][1000 genomes]
rs9261525	0.86[ASN][1000 genomes]
rs9261526	0.82[ASN][1000 genomes]
rs9261527	0.84[ASN][1000 genomes]
rs9261528	0.84[ASN][1000 genomes]
rs9261529	0.82[ASN][1000 genomes]
rs9261530	0.82[ASN][1000 genomes]
rs9261531	0.82[ASN][1000 genomes]
rs9261532	0.82[ASN][1000 genomes]
rs9261533	0.82[ASN][1000 genomes]

SNP	Gene	Cis/trans	Tissue	Source
rs3132124	HLA-A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30112800-30119200	Strong transcription	Placenta	Placenta
2	chr6:30112800-30120800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:30113000-30114600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr6:30113000-30119600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr6:30113600-30114800	Genic enhancers	Fetal Intestine Small	intestine
6	chr6:30113800-30118600	Weak transcription	Fetal Intestine Large	intestine
7	chr6:30114400-30115000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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