Variant report

Variant	rs4711784
Chromosome Location	chr6:44450139-44450140
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4711783	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4714793	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72869627	0.83[EUR][1000 genomes]
rs9381329	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885860	chr6:44428506-44454333	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44438000-44453200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:44444000-44465800	Weak transcription	Right Atrium	heart
3	chr6:44444200-44451800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:44444200-44453200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:44445400-44457600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:44446400-44457200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:44447000-44452000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr6:44448000-44450400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:44449200-44450600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:44449200-44451800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:44449200-44451800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr6:44449200-44452000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr6:44449200-44453400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:44449200-44453800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr6:44450000-44450200	Bivalent Enhancer	Fetal Muscle Leg	muscle
16	chr6:44450000-44450800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr6:44450000-44450800	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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