Variant report

Variant	rs72869627
Chromosome Location	chr6:44447393-44447394
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44442445..44447708-chr6:44448883..44454156,7	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4711783	0.83[EUR][1000 genomes]
rs4711784	0.83[EUR][1000 genomes]
rs4714792	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4714793	0.83[EUR][1000 genomes]
rs9349289	0.83[EUR][1000 genomes]
rs9381329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9395027	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv603006	chr6:44428506-44449697	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv885860	chr6:44428506-44454333	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44438000-44453200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:44441200-44448600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:44444000-44447600	Weak transcription	Brain Hippocampus Middle	brain
4	chr6:44444000-44465800	Weak transcription	Right Atrium	heart
5	chr6:44444200-44447600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:44444200-44447600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr6:44444200-44448800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr6:44444200-44448800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr6:44444200-44451800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr6:44444200-44453200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:44444400-44448800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:44444400-44448800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:44444600-44448600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:44445400-44447600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr6:44445400-44457600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr6:44446400-44457200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:44446600-44447400	Weak transcription	Brain Anterior Caudate	brain
18	chr6:44447000-44447800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:44447000-44448600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:44447000-44450000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr6:44447000-44452000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr6:44447200-44447800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr6:44447200-44447800	Enhancers	Brain Substantia Nigra	brain

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