Variant report

Variant	rs9395027
Chromosome Location	chr6:44444731-44444732
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:44442445..44447708-chr6:44448883..44454156,7	K562	blood:
2	chr6:44425423..44427943-chr6:44442829..44445117,2	K562	blood:
3	chr6:44437071..44439367-chr6:44444292..44446724,2	K562	blood:
4	chr6:44444523..44446527-chr6:44449929..44452433,2	K562	blood:
5	chr6:44442588..44445114-chr6:44456905..44459288,2	MCF-7	breast:
6	chr6:44443535..44445771-chr6:44611397..44614174,2	MCF-7	breast:
7	chr6:44444712..44445960-chr6:44612432..44613653,3	K562	blood:
8	chr6:44436258..44440979-chr6:44441987..44444990,5	K562	blood:

No data

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11969085	1.00[AFR][1000 genomes]
rs4714792	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72867847	1.00[AFR][1000 genomes]
rs72867849	1.00[AFR][1000 genomes]
rs72869627	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9349289	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9381329	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv603006	chr6:44428506-44449697	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv885860	chr6:44428506-44454333	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44438000-44453200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:44441200-44448600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:44441800-44446200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:44442400-44445600	Enhancers	K562	blood
5	chr6:44443200-44444800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:44443200-44445400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:44444000-44445600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr6:44444000-44445600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:44444000-44445600	Weak transcription	Left Ventricle	heart
10	chr6:44444000-44445800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr6:44444000-44445800	Weak transcription	Brain Anterior Caudate	brain
12	chr6:44444000-44445800	Weak transcription	Psoas Muscle	Psoas
13	chr6:44444000-44446000	Weak transcription	Ovary	ovary
14	chr6:44444000-44446400	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr6:44444000-44447600	Weak transcription	Brain Hippocampus Middle	brain
16	chr6:44444000-44465800	Weak transcription	Right Atrium	heart
17	chr6:44444200-44445000	Weak transcription	Fetal Intestine Small	intestine
18	chr6:44444200-44445200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr6:44444200-44445200	Weak transcription	HSMMtube	muscle
20	chr6:44444200-44445400	Weak transcription	Right Ventricle	heart
21	chr6:44444200-44446000	Weak transcription	Brain Substantia Nigra	brain
22	chr6:44444200-44447600	Weak transcription	Brain Cingulate Gyrus	brain
23	chr6:44444200-44447600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr6:44444200-44448800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr6:44444200-44448800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr6:44444200-44451800	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr6:44444200-44453200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:44444400-44445800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr6:44444400-44448800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr6:44444400-44448800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr6:44444600-44446600	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr6:44444600-44448600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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