Variant report

Variant	rs72867847
Chromosome Location	chr6:44431608-44431609
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11969085	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4714792	1.00[AFR][1000 genomes]
rs572508	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72867844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72867846	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72867849	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9349289	1.00[AFR][1000 genomes]
rs9395019	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9395027	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv603006	chr6:44428506-44449697	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv885860	chr6:44428506-44454333	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44396600-44432800	Weak transcription	Fetal Kidney	kidney
2	chr6:44416200-44432400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:44420800-44432400	Weak transcription	Fetal Lung	lung
4	chr6:44422400-44431800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:44422400-44432000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:44424800-44431800	Weak transcription	Right Atrium	heart
7	chr6:44424800-44439400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:44425000-44437800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:44429400-44433600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr6:44430200-44433200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:44430200-44433200	Enhancers	Spleen	Spleen
12	chr6:44430200-44433400	Enhancers	Ovary	ovary
13	chr6:44430400-44433400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:44430600-44431800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:44430600-44433400	Enhancers	HSMMtube	muscle
16	chr6:44430600-44439400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:44430800-44433200	Enhancers	HSMM	muscle
18	chr6:44431200-44433200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:44431400-44432200	Enhancers	Fetal Muscle Leg	muscle
20	chr6:44431400-44432200	Bivalent Enhancer	HepG2	liver
21	chr6:44431400-44433000	Enhancers	Placenta Amnion	Placenta Amnion
22	chr6:44431400-44433800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:44431600-44433600	Enhancers	Fetal Heart	heart
24	chr6:44431600-44436800	Weak transcription	K562	blood

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