Variant report

Variant	rs9349289
Chromosome Location	chr6:44441008-44441009
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:44439479..44441221-chr6:44441987..44444442,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11969085	1.00[AFR][1000 genomes]
rs4714792	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72867847	1.00[AFR][1000 genomes]
rs72867849	1.00[AFR][1000 genomes]
rs72869627	0.83[EUR][1000 genomes]
rs9381329	0.83[EUR][1000 genomes]
rs9395027	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv603006	chr6:44428506-44449697	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv885860	chr6:44428506-44454333	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44432200-44443400	Weak transcription	Right Atrium	heart
2	chr6:44433000-44443200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr6:44433200-44443200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:44438000-44453200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:44439000-44441400	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr6:44439200-44441400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr6:44439200-44441800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr6:44439200-44441800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:44439400-44441400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr6:44439400-44441400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:44439400-44441400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr6:44439400-44441800	Enhancers	H1 Cell Line	embryonic stem cell
13	chr6:44439400-44441800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:44439400-44441800	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr6:44439400-44441800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:44439600-44441400	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr6:44439600-44441400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:44439600-44441400	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr6:44439800-44442000	Enhancers	K562	blood
20	chr6:44439800-44443200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:44439800-44443200	Weak transcription	Psoas Muscle	Psoas
22	chr6:44439800-44443400	Weak transcription	Left Ventricle	heart
23	chr6:44439800-44443400	Weak transcription	Ovary	ovary
24	chr6:44440200-44441200	Enhancers	H9 Cell Line	embryonic stem cell
25	chr6:44440200-44443400	Weak transcription	Right Ventricle	heart
26	chr6:44440400-44443000	Weak transcription	Fetal Heart	heart
27	chr6:44440600-44443400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr6:44441000-44441200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
29	chr6:44441000-44441200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr6:44441000-44441200	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr6:44441000-44441200	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr6:44441000-44441800	Enhancers	Primary hematopoietic stem cells	blood
33	chr6:44441000-44442000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:44441000-44442600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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