Variant report
| Variant | rs4713011 |
|---|---|
| Chromosome Location | chr6:26663350-26663351 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:26656134..26658199-chr6:26661350..26663391,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs10456047 | 1.00[JPT][hapmap] |
| rs10456331 | 1.00[JPT][hapmap] |
| rs10484441 | 1.00[JPT][hapmap] |
| rs10946842 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[TSI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs11758306 | 0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs12193283 | 1.00[JPT][hapmap] |
| rs12194036 | 1.00[JPT][hapmap] |
| rs12205310 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs12208211 | 1.00[JPT][hapmap] |
| rs12208272 | 1.00[JPT][hapmap] |
| rs12211872 | 1.00[JPT][hapmap] |
| rs12661560 | 1.00[JPT][hapmap] |
| rs1884945 | 1.00[JPT][hapmap] |
| rs2893857 | 1.00[JPT][hapmap] |
| rs4713001 | 1.00[JPT][hapmap] |
| rs882010 | 1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948921 | chr6:26556890-27443957 | Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 472 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:4)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs4713011 | ZSCAN23 | cis | cerebellum | SCAN |
| rs4713011 | HIST1H2BH | cis | cerebellum | SCAN |
| rs4713011 | HIST1H4E | cis | cerebellum | SCAN |
| rs4713011 | BTN2A1 | cis | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
