Variant report

Variant	rs882010
Chromosome Location	chr6:26569366-26569367
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:39)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:39 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:26320916..26324695-chr6:26568559..26572226,5	K562	blood:
2	chr6:26171710..26174567-chr6:26566701..26569487,2	K562	blood:
3	chr6:26156493..26160609-chr6:26566713..26572551,10	K562	blood:
4	chr6:26525492..26528021-chr6:26567722..26570111,2	MCF-7	breast:
5	chr6:26536222..26540133-chr6:26565164..26569470,5	K562	blood:
6	chr6:26341264..26342451-chr6:26569043..26570054,3	K562	blood:
7	chr6:26209148..26211378-chr6:26567732..26569489,2	K562	blood:
8	chr6:26519454..26523332-chr6:26568814..26573401,9	K562	blood:
9	chr6:26568887..26570876-chr6:26573166..26576074,2	MCF-7	breast:
10	chr6:26568233..26570911-chr6:26596732..26598616,2	MCF-7	breast:
11	chr6:26568830..26570911-chr6:27113890..27117177,3	K562	blood:
12	chr6:26567325..26570025-chr6:26570280..26572074,2	MCF-7	breast:
13	chr6:26456882..26459678-chr6:26567698..26569705,2	K562	blood:
14	chr6:26322266..26322838-chr6:26569151..26570082,2	K562	blood:
15	chr6:26569051..26574263-chr6:27058255..27061104,5	K562	blood:
16	chr6:26566413..26579648-chr6:26592370..26599609,38	K562	blood:
17	chr6:26318750..26323113-chr6:26568559..26574896,7	K562	blood:
18	chr6:26198264..26200984-chr6:26569161..26573441,3	K562	blood:
19	chr6:26325742..26329401-chr6:26567650..26570455,4	K562	blood:
20	chr6:26568519..26570551-chr6:27058352..27060839,2	K562	blood:
21	chr6:26215231..26219129-chr6:26568240..26572057,4	K562	blood:
22	chr6:26537819..26539463-chr6:26567519..26569805,2	MCF-7	breast:
23	chr6:26553141..26555933-chr6:26567279..26569954,2	MCF-7	breast:
24	chr6:26331657..26333799-chr6:26567368..26569524,2	K562	blood:
25	chr6:26519760..26523332-chr6:26568841..26572559,5	K562	blood:
26	chr6:26329307..26333799-chr6:26568024..26573999,9	K562	blood:
27	chr6:26568882..26571175-chr6:26571456..26572979,2	K562	blood:
28	chr6:26569360..26571169-chr6:26582823..26585671,2	K562	blood:
29	chr6:26519493..26522345-chr6:26567503..26569793,2	MCF-7	breast:
30	chr6:26156671..26160280-chr6:26569301..26572551,5	K562	blood:
31	chr6:26537928..26538527-chr6:26569132..26569978,2	K562	blood:
32	chr6:26285527..26288388-chr6:26566429..26569428,2	K562	blood:
33	chr6:26471319..26475410-chr6:26567164..26571952,5	K562	blood:
34	chr6:26325462..26328933-chr6:26567431..26570210,5	K562	blood:
35	chr6:26530786..26533089-chr6:26568633..26571101,2	K562	blood:
36	chr6:26216366..26219129-chr6:26567690..26570174,4	K562	blood:
37	chr6:26219518..26221470-chr6:26568147..26570701,2	K562	blood:
38	chr6:26568033..26580216-chr6:26588796..26603066,49	K562	blood:
39	chr6:26504071..26506546-chr6:26568162..26569845,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000168298	Chromatin interaction
ENSG00000168274	Chromatin interaction
ENSG00000158406	Chromatin interaction
ENSG00000228223	Chromatin interaction
ENSG00000196866	Chromatin interaction
ENSG00000112763	Chromatin interaction
ENSG00000199289	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000261353	Chromatin interaction
ENSG00000197409	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000182952	Chromatin interaction
ENSG00000158373	Chromatin interaction
ENSG00000187990	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000197846	Chromatin interaction
ENSG00000220875	Chromatin interaction
ENSG00000146109	Chromatin interaction

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10447390	0.81[CEU][hapmap]
rs10447391	0.81[CEU][hapmap]
rs10456047	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10456331	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10484441	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10807008	1.00[CEU][hapmap]
rs10946820	0.81[CEU][hapmap]
rs10946821	0.81[CEU][hapmap]
rs10946823	0.86[CEU][hapmap]
rs10946824	0.86[CEU][hapmap]
rs10946825	0.85[CEU][hapmap]
rs10946826	0.86[CEU][hapmap]
rs10946827	0.81[CEU][hapmap]
rs10946829	0.86[CEU][hapmap]
rs10946832	1.00[CEU][hapmap]
rs10946842	1.00[JPT][hapmap]
rs1131936	0.93[CEU][hapmap]
rs12191917	0.86[CEU][hapmap]
rs12193283	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12194001	0.83[CEU][hapmap]
rs12194036	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12194073	0.81[CEU][hapmap]
rs12196371	1.00[CEU][hapmap]
rs12197304	0.84[ASN][1000 genomes]
rs12198993	0.81[CEU][hapmap]
rs12201546	0.86[CEU][hapmap]
rs12205310	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12206812	0.86[CEU][hapmap]
rs12207930	0.86[CEU][hapmap]
rs12208211	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12208272	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12208788	0.93[CEU][hapmap]
rs12211872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12214444	1.00[CEU][hapmap]
rs12214486	0.81[CEU][hapmap]
rs12214924	0.86[CEU][hapmap]
rs12661560	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12664899	0.93[CEU][hapmap]
rs17537465	0.93[CEU][hapmap]
rs17539219	0.86[CEU][hapmap]
rs17610161	1.00[CEU][hapmap]
rs17611220	0.81[CEU][hapmap]
rs17611438	0.85[CEU][hapmap]
rs1884945	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2393652	0.86[CEU][hapmap]
rs2393664	0.81[CEU][hapmap]
rs2893845	0.86[CEU][hapmap]
rs2893847	0.86[CEU][hapmap]
rs2893848	0.86[CEU][hapmap]
rs2893849	0.93[CEU][hapmap]
rs2893856	0.93[CEU][hapmap]
rs2893857	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3208734	0.81[CEU][hapmap]
rs3757143	1.00[YRI][hapmap]
rs3846843	0.86[CEU][hapmap]
rs3846844	0.86[CEU][hapmap]
rs3846847	0.81[CEU][hapmap]
rs3846848	0.86[CEU][hapmap]
rs3846849	0.81[CEU][hapmap]
rs3902051	0.93[CEU][hapmap]
rs4083469	0.81[CEU][hapmap]
rs4609015	0.86[CEU][hapmap]
rs4711108	1.00[CEU][hapmap]
rs4711109	0.81[CEU][hapmap]
rs4711110	1.00[CEU][hapmap]
rs4711111	0.81[CEU][hapmap]
rs4712986	0.93[CEU][hapmap]
rs4712988	0.93[CEU][hapmap]
rs4712990	1.00[CEU][hapmap]
rs4712993	0.86[CEU][hapmap]
rs4712994	0.86[CEU][hapmap]
rs4712996	0.86[CEU][hapmap]
rs4712999	0.86[CEU][hapmap];1.00[YRI][hapmap]
rs4713000	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4713001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4713011	1.00[JPT][hapmap]
rs56034653	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456724	0.93[CEU][hapmap]
rs6900725	0.86[CEU][hapmap]
rs6910023	0.86[CEU][hapmap]
rs6912934	0.93[CEU][hapmap]
rs6920986	0.86[CEU][hapmap]
rs6926878	0.86[CEU][hapmap]
rs6928454	0.81[CEU][hapmap]
rs6929846	0.86[CEU][hapmap]
rs72843766	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7355	0.93[CEU][hapmap]
rs7356849	0.93[CEU][hapmap]
rs7744254	0.86[CEU][hapmap]
rs7745238	0.81[CEU][hapmap]
rs7745767	0.81[CEU][hapmap]
rs7751280	0.86[CEU][hapmap]
rs7768108	1.00[CEU][hapmap]
rs7770214	0.86[CEU][hapmap]
rs9295690	0.81[CEU][hapmap]
rs9467759	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26568000-26569800	Active TSS	H1 Cell Line	embryonic stem cell
2	chr6:26568000-26569800	Active TSS	H9 Cell Line	embryonic stem cell
3	chr6:26568000-26569800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:26568000-26569800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:26568000-26570000	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr6:26568000-26570000	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr6:26568000-26570200	Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr6:26568200-26569400	Active TSS	Primary hematopoietic stem cells	blood
9	chr6:26568200-26569400	Active TSS	Primary T helper naive cells from peripheral blood	blood
10	chr6:26568200-26569400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
11	chr6:26568200-26569400	Active TSS	Primary T helper cells PMA-I stimulated	--
12	chr6:26568200-26569400	Active TSS	Primary T helper cells fromperipheralblood	blood
13	chr6:26568200-26569400	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:26568200-26569400	Active TSS	Cortex derived primary cultured neurospheres	brain
15	chr6:26568200-26569400	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
16	chr6:26568200-26569400	Active TSS	Brain Germinal Matrix	brain
17	chr6:26568200-26569400	Active TSS	Fetal Brain Female	brain
18	chr6:26568200-26569400	Active TSS	Fetal Muscle Trunk	muscle
19	chr6:26568200-26569400	Active TSS	Stomach Smooth Muscle	stomach
20	chr6:26568200-26569400	Active TSS	HepG2	liver
21	chr6:26568200-26569400	Active TSS	HUVEC	blood vessel
22	chr6:26568200-26569600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:26568200-26569600	Active TSS	Primary T cells from cord blood	blood
24	chr6:26568200-26569600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
25	chr6:26568200-26569600	Active TSS	Primary T killer memory cells from peripheral blood	blood
26	chr6:26568200-26569600	Active TSS	Fetal Kidney	kidney
27	chr6:26568200-26569600	Active TSS	Rectal Smooth Muscle	rectum
28	chr6:26568200-26569600	Active TSS	GM12878-XiMat	blood
29	chr6:26568200-26569800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:26568200-26569800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr6:26568200-26569800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:26568200-26569800	Active TSS	iPS-15b Cell Line	embryonic stem cell
33	chr6:26568200-26569800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr6:26568200-26569800	Active TSS	Primary hematopoietic stem cells short term culture	blood
35	chr6:26568200-26569800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
36	chr6:26568200-26569800	Active TSS	Primary T regulatory cells fromperipheralblood	blood
37	chr6:26568200-26569800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
38	chr6:26568200-26569800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr6:26568200-26569800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr6:26568200-26569800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr6:26568200-26569800	Active TSS	Brain Angular Gyrus	brain
42	chr6:26568200-26569800	Active TSS	Brain Anterior Caudate	brain
43	chr6:26568200-26569800	Active TSS	Brain Inferior Temporal Lobe	brain
44	chr6:26568200-26569800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
45	chr6:26568200-26569800	Active TSS	Duodenum Smooth Muscle	Duodenum
46	chr6:26568200-26569800	Active TSS	Rectal Mucosa Donor 29	rectum
47	chr6:26568200-26569800	Active TSS	Right Atrium	heart
48	chr6:26568200-26569800	Active TSS	A549	lung
49	chr6:26568200-26569800	Active TSS	NH-A	brain
50	chr6:26568200-26570000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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